CK936829

Overview
NameCK936829
Unique NameCK936829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSA (Photosystem I assembly protein ycf3 OS=Oryza sativa GN=ycf3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_ORYNI (Photosystem I assembly protein ycf3 OS=Oryza nivara GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_GOSHI (Photosystem I assembly protein ycf3 OS=Gossypium hirsutum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_GOSBA (Photosystem I assembly protein ycf3 OS=Gossypium barbadense GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_LOTJA (Photosystem I assembly protein ycf3 OS=Lotus japonicus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFS+VANILL+IIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_HORVU (Photosystem I assembly protein ycf3 OS=Hordeum vulgare GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSR+NGNFIDKTFSI+ANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTFSIIANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_ATRBE (Photosystem I assembly protein ycf3 OS=Atropa belladonna GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFID+TFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDQTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_SOLLC (Photosystem I assembly protein ycf3 OS=Solanum lycopersicum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.817e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_SOLBU (Photosystem I assembly protein ycf3 OS=Solanum bulbocastanum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.817e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSR NGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRTNGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_COFAR (Photosystem I assembly protein ycf3 OS=Coffea arabica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.597e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRS+INGNFIDKTFSIVANILLRIIPTT GE+EAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEREAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of CK936829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_ORYSA3.410e-1690.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYNI3.410e-1690.91Photosystem I assembly protein ycf3 OS=Oryza nivar... [more]
YCF3_GOSHI3.410e-1695.24Photosystem I assembly protein ycf3 OS=Gossypium h... [more]
YCF3_GOSBA3.410e-1695.24Photosystem I assembly protein ycf3 OS=Gossypium b... [more]
YCF3_LOTJA4.454e-1692.86Photosystem I assembly protein ycf3 OS=Lotus japon... [more]
YCF3_HORVU4.454e-1686.36Photosystem I assembly protein ycf3 OS=Hordeum vul... [more]
YCF3_ATRBE4.454e-1692.86Photosystem I assembly protein ycf3 OS=Atropa bell... [more]
YCF3_SOLLC5.817e-1692.86Photosystem I assembly protein ycf3 OS=Solanum lyc... [more]
YCF3_SOLBU5.817e-1692.86Photosystem I assembly protein ycf3 OS=Solanum bul... [more]
YCF3_COFAR7.597e-1692.86Photosystem I assembly protein ycf3 OS=Coffea arab... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936829 ID=CK936829; Name=CK936829; organism=Citrus sinensis; type=EST; length=321bp
GGGTCTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGA
TCATTTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACC
TATGCCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGA
TTGTAGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAA
GAGGCATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTT
ACCCCTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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