CK936829

Overview
NameCK936829
Unique NameCK936829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_SACHY (Photosystem I assembly protein ycf3 OS=Saccharum hybrid GN=ycf3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKTFSIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_PLAOC (Photosystem I assembly protein ycf3 OS=Platanus occidentalis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_NYMAL (Photosystem I assembly protein ycf3 OS=Nymphaea alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_NUPAD (Photosystem I assembly protein ycf3 OS=Nuphar advena GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_MAIZE (Photosystem I assembly protein ycf3 OS=Zea mays GN=ycf3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKTFSIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_LIRTU (Photosystem I assembly protein ycf3 OS=Liriodendron tulipifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_HELAN (Photosystem I assembly protein ycf3 OS=Helianthus annuus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_DRIGR (Photosystem I assembly protein ycf3 OS=Drimys granadensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_DIOEL (Photosystem I assembly protein ycf3 OS=Dioscorea elephantipes GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRS+INGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDGAI
Sbjct:    1 MPRSQINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGAI 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_CUSRE (Photosystem I assembly protein ycf3 OS=Cuscuta reflexa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRD 224
            MPRSRINGNF+DKTFSIVANILLRIIPTT GEKEAFTYYRD
Sbjct:    1 MPRSRINGNFLDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41          
The following BLAST results are available for this feature:
BLAST of CK936829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_SACHY9.922e-1688.64Photosystem I assembly protein ycf3 OS=Saccharum h... [more]
YCF3_PLAOC9.922e-1695.24Photosystem I assembly protein ycf3 OS=Platanus oc... [more]
YCF3_NYMAL9.922e-1695.24Photosystem I assembly protein ycf3 OS=Nymphaea al... [more]
YCF3_NUPAD9.922e-1695.24Photosystem I assembly protein ycf3 OS=Nuphar adve... [more]
YCF3_MAIZE9.922e-1688.64Photosystem I assembly protein ycf3 OS=Zea mays GN... [more]
YCF3_LIRTU9.922e-1695.24Photosystem I assembly protein ycf3 OS=Liriodendro... [more]
YCF3_HELAN9.922e-1695.24Photosystem I assembly protein ycf3 OS=Helianthus ... [more]
YCF3_DRIGR9.922e-1695.24Photosystem I assembly protein ycf3 OS=Drimys gran... [more]
YCF3_DIOEL9.922e-1690.91Photosystem I assembly protein ycf3 OS=Dioscorea e... [more]
YCF3_CUSRE9.922e-1695.12Photosystem I assembly protein ycf3 OS=Cuscuta ref... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936829 ID=CK936829; Name=CK936829; organism=Citrus sinensis; type=EST; length=321bp
GGGTCTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGA
TCATTTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACC
TATGCCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGA
TTGTAGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAA
GAGGCATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTT
ACCCCTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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