CK936829

Overview
NameCK936829
Unique NameCK936829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_WHEAT (Photosystem I assembly protein ycf3 OS=Triticum aestivum GN=ycf3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSR+NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_POPTR (Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_POPAL (Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_PHAAO (Photosystem I assembly protein ycf3 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_SOYBN (Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_PHAVU (Photosystem I assembly protein ycf3 OS=Phaseolus vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_MORIN (Photosystem I assembly protein ycf3 OS=Morus indica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAF YYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFAYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_SACOF (Photosystem I assembly protein ycf3 OS=Saccharum officinarum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.400e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_LOLPR (Photosystem I assembly protein ycf3 OS=Lolium perenne GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.400e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSR NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRANGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_ILLOL (Photosystem I assembly protein ycf3 OS=Illicium oligandrum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.400e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            M RSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of CK936829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_WHEAT2.887e-1586.36Photosystem I assembly protein ycf3 OS=Triticum ae... [more]
YCF3_POPTR2.887e-1592.86Photosystem I assembly protein ycf3 OS=Populus tri... [more]
YCF3_POPAL2.887e-1592.86Photosystem I assembly protein ycf3 OS=Populus alb... [more]
YCF3_PHAAO2.887e-1592.86Photosystem I assembly protein ycf3 OS=Phalaenopsi... [more]
YCF3_SOYBN3.770e-1592.86Photosystem I assembly protein ycf3 OS=Glycine max... [more]
YCF3_PHAVU3.770e-1592.86Photosystem I assembly protein ycf3 OS=Phaseolus v... [more]
YCF3_MORIN3.770e-1592.86Photosystem I assembly protein ycf3 OS=Morus indic... [more]
YCF3_SACOF8.400e-1586.36Photosystem I assembly protein ycf3 OS=Saccharum o... [more]
YCF3_LOLPR8.400e-1586.36Photosystem I assembly protein ycf3 OS=Lolium pere... [more]
YCF3_ILLOL8.400e-1592.86Photosystem I assembly protein ycf3 OS=Illicium ol... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936829 ID=CK936829; Name=CK936829; organism=Citrus sinensis; type=EST; length=321bp
GGGTCTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGA
TCATTTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACC
TATGCCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGA
TTGTAGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAA
GAGGCATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTT
ACCCCTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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