EY665835

Overview
NameEY665835
Unique NameEY665835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665835 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 6.120e-11
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 3 
Query:  411 LPTDFDWRDHGAVTGVKDQGACGSCWSFSA 500
            LP+  DWR  GAV  +K+Q  CGSCW+FSA
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSA 30

HSP 2 Score: 33.4982 bits (75), Expect = 6.120e-11
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = 2 
Query:  617 CDS---GCNGGVMDSAF*YLLQGGGGERKKGIPF 709
            CD+   GCNGG M++AF Y++  GG + ++  P+
Sbjct:   56 CDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPY 89

HSP 3 Score: 28.1054 bits (61), Expect = 6.120e-11
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1 
Query:  508 ALEGAHFLSTGELVSLREQQLVD 576
            A+E  + + TG+L+SL EQ+LVD
Sbjct:   33 AVESINKIRTGQLISLSEQELVD 55
[Close]
BLAST of EY665835 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 54/194 (27.84%), Postives = 78/194 (40.21%), Query Frame = 3 
Query:  150 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATRRFGGSALLIDGRACQPQGATACGLVITSGDSKGNLGHVTLGAMVGLWTLPFDTYSRVGGVNEKKGYPSPGT 719
            ++H+ L+K    K Y  + E + R  +++ NL+      L     +H    G+    D+T  E   + +G  R  R               LP   DWR+ G VT VK QG+CG+CW+FSA     G   L  G+       +A  LV  S + K    +   G   G  T  F      GG+     YP   T
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCR-MGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLI---SLSAQNLVDCSNEEK----YGNKGCGGGYMTEAFQYIIDNGGIEADASYPYKAT 218
The following BLAST results are available for this feature:
BLAST of EY665835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ERVB_TABDI6.120e-1160.00Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATS_MOUSE9.260e-1127.84Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665835 ID=EY665835; Name=EY665835; organism=Citrus sinensis; type=EST; length=874bp
AAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTCCTCCTCCTATCTTCT
GTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGATGCTATGATCAGACA
GGTCGTGCCGTCAGACGGCGAACAATCCGAAGATCATCTCCTGAACGCGG
AGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACTTACGCCACC
CAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAATCTGCGCCG
AGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACGGTGTCACCA
AGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTCCTTGGCTTG
AATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAAGGCTCCTATTCTCCC
CACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACGGCGCCGTTA
CTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCGTTTAGTGCA
ACCCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGAGCTTGTCA
GCCTCAGGGAGCAACAGCTTGTGGACTGGTGATCACGAGTGGTGATTCCA
AAGGAAATCTGGGTCATGTGACTCTGGGTGCAATGGTGGGGTTATGGACT
CTGCCTTTTGATACTTACTCCAGGGTGGGGGGGGTGAACGAAAAAAAGGG
ATACCCTTCCCCTGGGACCAAAGGGGGGTTCCTGGCAATTTTGACCAAAA
ACCAAAATTGGGTGGCACTTGGTTCTAATTTTCAGGGGGTTTTTTCCCCT
TGAGGAAAAGACAGAAGGGGGGGCCAATTTTGGGGGGAAAACTTGGCCCC
CCCCGGCGCGGGGGGGACACATCG
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