CX043710

Overview
NameCX043710
Unique NameCX043710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEA 337
            K+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG +      AKY SRAA+LY     +E  KS+A +A
Sbjct:   23 KVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCST-NDTNAKYNSRAAQLY-----REKIKSLASQA 124          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG2_RAT (ADP-ribosylation factor GTPase-activating protein 2 OS=Rattus norvegicus GN=Arfgap2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 86/227 (37.89%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQ------------GRQE----------TQDAPG--------SPKVSHTVLTSTV--KKPLGAKKS-GKTGGLGARKLTSKPSESLYEQ 595
            K CFDC AK+P+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG         KY SRAA++Y++ + +  + ++A                     P+ K  D   E+ Q            G Q+           Q  PG        SP+ S  + +S +  KKP  AKK  G   GLGA+K++++    +  Q
Sbjct:   24 KACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCL-ANDANTKYNSRAAQMYREKIRQLGSTALARHG---TDLWIDNMNSAPSHSPEKKDSDFFTEHTQAPAWDTAATDPSGTQQPALPSESSSLAQPEPGPNTDLLGTSPQASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSNQSFTEIERQ 246          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 295
            K CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++
Sbjct:   24 KACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYRE 116          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG2_MOUSE (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 295
            K CFDC AK+P+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG         KYTSRAA++Y++
Sbjct:   24 KACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCM-ANDANTKYTSRAAQMYRE 116          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG3_MOUSE (ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEA 337
            K+CFDC AKNP+WAS++YG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN+ A  FF QHG        AKY SRAA+LY     +E  K++A +A
Sbjct:   23 KVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCAT-KDTNAKYNSRAAQLY-----REKIKTLATQA 124          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG3_RAT (ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEA 337
            K+CFDC AKNP+WAS++YG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG        AKY SRAA+LY     +E  K++A +A
Sbjct:   23 KVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCAT-KDTNAKYNSRAAQLY-----REKIKTLATQA 124          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD6_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 292
            K+C DC  KNP WASV+YGIF+C++CS  HR LGVHISFVRS  +DSWSA Q+K M  GGN R   FF Q+G      I +KY S AA +Y+
Sbjct:   17 KVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSAIQIKKMEAGGNERLNKFFAQYGIAKETDIISKYNSNAASVYR 108          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: YDBH_SCHPO (Uncharacterized protein C22E12.17c OS=Schizosaccharomyces pombe GN=SPAC22E12.17c PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFV---RSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWT---DGGKIEAKYTSRAAELYKQILAKEVAKSMAEE 334
            K+CFDC AKNPTW+S T+GI+LC+DCSA HR++GVHISFV   RST LDSW+  QL++M  GGN  A+ +FK+HG     +      KY+S+ A+ Y + L     KS+A E
Sbjct:   22 KVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRSTVLDSWTYAQLRVMRVGGNENARNYFKRHGGVSLLNSKDCRLKYSSKTAKQYLEKL-----KSLAVE 128          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD7_ARATH (ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 292
            K+C DC+ KNP WAS++YGIF+C++CS  HR LGVHISFVRS  +DSWS  Q+K M  GGN R   F  Q+G +    I +KY S AA +Y+
Sbjct:   17 KVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDAGGNERLNNFLAQYGISKETDIISKYNSNAASVYR 108          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: GLO3_YEAST (ADP-ribosylation factor GTPase-activating protein GLO3 OS=Saccharomyces cerevisiae GN=GLO3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFF-----KQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSM 325
            ++CFDC  KNPTW SV +G+ LCI CSAVHR++GVHI+FV+S+ LD W+   L+    GGN++A+ FF     KQ   T     + KYTS  A+ YK  L K+V K M
Sbjct:   29 RVCFDCGNKNPTWTSVPFGVMLCIQCSAVHRNMGVHITFVKSSTLDKWTINNLRRFKLGGNHKARDFFLKNNGKQLLNTANVDAKTKYTSPVAKKYKIHLDKKVQKDM 136          
The following BLAST results are available for this feature:
BLAST of CX043710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ARFG3_HUMAN8.070e-2960.19ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_RAT8.070e-2937.89ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_PONAB8.070e-2962.77ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_MOUSE1.798e-2862.77ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MOUSE5.231e-2858.33ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_RAT1.165e-2758.33ADP-ribosylation factor GTPase-activating protein ... [more]
AGD6_ARATH2.430e-2557.61Probable ADP-ribosylation factor GTPase-activating... [more]
YDBH_SCHPO9.234e-2551.79Uncharacterized protein C22E12.17c OS=Schizosaccha... [more]
AGD7_ARATH3.509e-2454.35ADP-ribosylation factor GTPase-activating protein ... [more]
GLO3_YEAST8.642e-2349.07ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043710 ID=CX043710; Name=CX043710; organism=Citrus sinensis; type=EST; length=773bp
GTTCCATGCACCTCGTAAGATGTGTTTTGATTGTAATGCTAAGAACCCGA
CGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTGCTCTGCC
GTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTT
AGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACA
ACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAA
ATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCT
TGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTGCCATCAT
CACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTT
AAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAGAAACTCA
AGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACTAGTACCG
TCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGGTCTAGGT
GCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGCAGAAGCC
TGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACATCGTCAG
TTAGTTTGCCCTTTGCTTCTCGCTTTGAGTATGTGGATAATGTCCAATCT
TCCGAGTTGAGTTCTGGTGGTCCACAAGTGCTTAGCCATGTAGCTCCACC
AAAGTCCGTCAGCTTCTTTGCTG
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