CX043710

Overview
NameCX043710
Unique NameCX043710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: SMAP2_HUMAN (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 229
            K C DC +K P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+ EQ++ M   GN +A   ++ +
Sbjct:   26 KFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAY 96          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 229
            K C DC +K P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+ EQ++ M   GN +A   ++ +
Sbjct:   26 KFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAY 96          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: YIQ9_SCHPO (Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe GN=SPAC824.09c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 2
Query:   17 KMCFDCNA-KNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQ-----HGWTD---GGKIEAKYTSRAAELYKQILAKEVAK 319
            K+C DC   + P WAS   G+F+CI CS VHRSLGVH+S V+S +LDSW+ EQ + M   GN RA ++++      H  +D      I+ KY  +   LY +I + E  K
Sbjct:   26 KVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGGHVPSDSKIATFIKTKYEFKKWVLYPEIPSPETLK 135          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD15_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 2
Query:    5 HAPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 223
            H   + C DC +K P WASV  GIF+C+ CS +HRSLGVHIS VRS  LD+W  +Q+  M   GN +   +++
Sbjct:   25 HPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWLPDQVAFMKSTGNAKGNEYWE 97          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.478e-14
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMV-YGGNNRAQVFFK 223
            K C DC +  P W S++ G+F+CI CS VHRSLGVHIS V S  LD W+ +Q+ M+V YGGN      F+
Sbjct:   60 KYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFE 129          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: CEG1A_DROME (Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ--ILAKEVAKSMAEEAG 340
            C DC A NP WAS+  G+ +CI+CS VHR+LG HIS VRS  LD W +  L +M+  GN+ A        W    +   K TS+A+   K+  + +K  AK      G
Sbjct:  717 CVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAIGNSLANSV-----WESNTRQRVKPTSQASREDKERWVRSKYEAKEFLTPLG 819          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP3_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ACAP3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2
Query:    8 APRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 223
            A    C DC   +P WAS+  G+ LCI+CS +HRSLGVH S VRS  LDSW  E LK+M   GN+     ++
Sbjct:  413 AGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCELGNSAVNQIYE 484          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP2_CHICK (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Gallus gallus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 202
            C DC   +P WAS+  GI LCI+CS +HRSLGVH S VRS  LDSW  E LK+M   GN+
Sbjct:  414 CCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDSWEPELLKLMCELGND 473          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP2_RABIT (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Oryctolagus cuniculus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 59/187 (31.55%), Postives = 84/187 (44.92%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGK-------------IEAKYTSRA-AELYKQILA-----KEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKK 526
            C DC   +P WAS+  GI LCI+CS +HRSLGVH S VRS  LD+W  E LK+M   GN+     ++ +    G K             I+AKY  R   + Y    +     K+V    +EE  L                    IQ + K N  G Q++ D  G   +  TV  +++ +P G ++
Sbjct:  414 CCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCELGNDVINRVYEANVEKMGIKKPQPGQRQEKEAYIKAKYVERKFVDKYSVSSSPPEQEKKVVSKDSEEKRLSIPKLGPGDQVR------TSIQSSVKSNDSGIQQSSD-DGRESLPSTVSANSLYEPEGERQ 593          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP2_RAT (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 202
            C DC   +P WAS+  GI LCI+CS +HRSLGVH S VRS  LD+W  E LK+M   GN+
Sbjct:  414 CCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCELGND 473          
The following BLAST results are available for this feature:
BLAST of CX043710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SMAP2_HUMAN2.280e-1547.89Stromal membrane-associated protein 2 OS=Homo sapi... [more]
SMAP2_BOVIN2.280e-1547.89Stromal membrane-associated protein 2 OS=Bos tauru... [more]
YIQ9_SCHPO5.078e-1541.82Uncharacterized protein C824.09c OS=Schizosaccharo... [more]
AGD15_ARATH5.078e-1547.95Probable ADP-ribosylation factor GTPase-activating... [more]
AGD11_ARATH1.478e-1451.43Probable ADP-ribosylation factor GTPase-activating... [more]
CEG1A_DROME2.520e-1439.81Centaurin-gamma-1A OS=Drosophila melanogaster GN=c... [more]
ACAP3_HUMAN2.520e-1448.61Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_CHICK4.299e-1458.33Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_RABIT5.615e-1431.55Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_RAT9.578e-1456.67Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043710 ID=CX043710; Name=CX043710; organism=Citrus sinensis; type=EST; length=773bp
GTTCCATGCACCTCGTAAGATGTGTTTTGATTGTAATGCTAAGAACCCGA
CGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTGCTCTGCC
GTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTT
AGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACA
ACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAA
ATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCT
TGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTGCCATCAT
CACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTT
AAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAGAAACTCA
AGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACTAGTACCG
TCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGGTCTAGGT
GCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGCAGAAGCC
TGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACATCGTCAG
TTAGTTTGCCCTTTGCTTCTCGCTTTGAGTATGTGGATAATGTCCAATCT
TCCGAGTTGAGTTCTGGTGGTCCACAAGTGCTTAGCCATGTAGCTCCACC
AAAGTCCGTCAGCTTCTTTGCTG
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