CX043710

Overview
NameCX043710
Unique NameCX043710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP1_BOVIN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ACAP1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 199
            C DC    P WAS+  G+ LCI CS +HRSLGVH S VRS  LDSW  E +K+M   GN
Sbjct:  420 CCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 478          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMV-YGGNNRAQVFFK 223
            ++C DC A +P WAS   G+F+C+ C  VHRSLG HIS V S  LD WS E++  M+  GGN  A   ++
Sbjct:   28 RVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYE 97          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP3_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 199
            C DC+A NP WAS+  G  +CI+CS +HR LG H+S VRS +LD W  E L +M   GN
Sbjct:  641 CIDCDAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDWPPELLAVMTAMGN 699          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP2_RAT (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            C DC A NPTWAS+  G  +CI+CS +HR+LG H+S VRS +LD W  E   ++   GN+ A
Sbjct:  940 CVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPRELTLVLTAIGNDTA 1001          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP2_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            C DC A NPTWAS+  G  +CI+CS +HR+LG H+S VRS +LD W  E   ++   GN+ A
Sbjct:  940 CVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPRELTLVLTAIGNDTA 1001          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP7_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 7 OS=Homo sapiens GN=AGAP7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            C DC  +NP WAS+  G+ +CI+CS +HRSLG  +S VRS  LD W  E  K+M   GN+ A
Sbjct:  456 CVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSIGNDLA 517          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP4_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4 OS=Homo sapiens GN=AGAP4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            C DC  +NP WAS+  G+ +CI+CS +HRSLG  +S VRS  LD W  E  K+M   GN+ A
Sbjct:  456 CVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSIGNDLA 517          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGA11_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 11 OS=Homo sapiens GN=AGAP11 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            C DC  +NP WAS+  G+ +CI+CS +HRSLG  +S VRS  LD W  E  K+M   GN+ A
Sbjct:  343 CVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSIGNDLA 404          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP6_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6 OS=Homo sapiens GN=AGAP6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMM 184
            C DC  +NP WAS+  G+ +CI+CS +HRSLG H+S VRS  LD W  E  K+M
Sbjct:  456 CVDCETQNPKWASLNLGVLMCIECSGIHRSLGPHLSRVRSLELDDWPVELRKVM 509          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: UCP3_SCHPO (UBA domain-containing protein 3 OS=Schizosaccharomyces pombe GN=ucp3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 2
Query:   20 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFF 220
            +C DC+ +   WAS   GIFLC+ C+ +HR LG H+S V+S +LD WS +Q++ M + GN  A  ++
Sbjct:   22 LCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEKMKHWGNINANRYW 88          
The following BLAST results are available for this feature:
BLAST of CX043710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ACAP1_BOVIN6.208e-1355.93Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGD12_ARATH8.108e-1347.14ADP-ribosylation factor GTPase-activating protein ... [more]
AGAP3_HUMAN8.108e-1352.54Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_RAT8.108e-1350.00Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_MOUSE8.108e-1350.00Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP7_HUMAN1.806e-1250.00Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP4_HUMAN1.806e-1250.00Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA11_HUMAN1.806e-1250.00Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP6_HUMAN2.359e-1253.70Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
UCP3_SCHPO4.024e-1243.28UBA domain-containing protein 3 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043710 ID=CX043710; Name=CX043710; organism=Citrus sinensis; type=EST; length=773bp
GTTCCATGCACCTCGTAAGATGTGTTTTGATTGTAATGCTAAGAACCCGA
CGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTGCTCTGCC
GTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTT
AGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACA
ACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAA
ATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCT
TGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTGCCATCAT
CACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTT
AAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAGAAACTCA
AGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACTAGTACCG
TCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGGTCTAGGT
GCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGCAGAAGCC
TGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACATCGTCAG
TTAGTTTGCCCTTTGCTTCTCGCTTTGAGTATGTGGATAATGTCCAATCT
TCCGAGTTGAGTTCTGGTGGTCCACAAGTGCTTAGCCATGTAGCTCCACC
AAAGTCCGTCAGCTTCTTTGCTG
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