CK936758

Overview
NameCK936758
Unique NameCK936758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  256 QAWKHSKSTGVDETDANVE---------QIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIGKTNAAAYSALNSQFPGEVTIADAVFG 633
            Q +K +K T   +TD  ++         + PGLNTLG+S  R D    G  P H HPR+SE+  V++G ++ GFV +   NN +   VL KGDVFVFP+GL+    + G   A A+S  NSQ PG V I + VFG
Sbjct:   53 QDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGE-VFG 183          
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  295 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIGKTNAAAYSALNSQFPGEVTIADAVFGAN 639
            T A V Q PG+N LGISA R+D A  G  P H HP ASE+  V +GT+  GF+TS   +NT+  + L  GD+ VFPQGL+   +N G++ A A  A +   PG + I D    AN
Sbjct:   73 TPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPG-LQITDYALFAN 184          
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  172 QGWCVCEWEVLQGPQACESRR--------FLLLRARQAWKHSKSTGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIGKTNAAAYSALNSQFPGEVTIADAVF 630
            Q +CV +    +GP     ++        F+      A   S       T A V Q PG+N LGIS  R+D A  G  P H HP ASE+ +V +GT+  GFV SD   NT   + L KGD+ VFPQGL+    N G+  A A+++  S  PG   +  A+F
Sbjct:   26 QDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALF 183          
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.090e-18
Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  295 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIGKTNAAAYSALNSQFPG 603
            T A V Q PG+  LG++  R+D AP G  P H HP ASEI  V+EGT+   F++S    N +  K L  GDV VFPQGL+      GK  A     L  + PG
Sbjct:   75 TPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG 173          

HSP 2 Score: 38.891 bits (89), Expect = 7.090e-18
Identity = 21/46 (45.65%), Postives = 25/46 (54.35%), Query Frame = 2
Query:  140 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTAN 277
            + D CVA N P      +G  CK+     A DF +SGL KPGNT N
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTN 68          
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  295 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIGKTNAAAYSALNSQFPGEVTIADAVFGANPSINPDFLGKAF 675
            T A + + P LN   +S   + + P    PPH HPR++E+ LV++G L VGF+ +    N L  + L  GD+FVFP+G++   FN G   A A SA  S  PG V +   VFG    I+   L K+F
Sbjct:   73 TKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSF 194          
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  295 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIGKTNAAAYSALNSQFPGEVTIADAVFGANPSINPDFLGKAF 675
            T A + + P LN   +S   + Y P    PPH HPR++E+ L+++G L VGFV +    N L  + L  GD+FVFP+G++   FN G   A A SA  S   G V++   VFG N  I+   L K+F
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSF 194          
BLAST of CK936758 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  295 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIXXXFNIG-KTNAAAYSALNSQFPGEVTIADAVFGA 636
            T A   + P L    +S   + +      PPHIHPRASE+ +V++G L VG V + + N T+  + L  GD+FVFP+G++   FN G    A A+SA  S  PG +++  A+FG+
Sbjct:   69 TKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS 182          
The following BLAST results are available for this feature:
BLAST of CK936758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL34_ARATH6.022e-1942.22Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL814_ORYSJ5.098e-1845.22Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
ABP20_PRUPE5.098e-1836.65Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GLP1_IPONI7.090e-1843.69Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL92_ORYSJ9.614e-1738.58Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ1.256e-1639.37Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ1.535e-1438.26Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_D03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936758 ID=CK936758; Name=CK936758; organism=Citrus sinensis; type=EST; length=677bp
GAGGAATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGACT
TAATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCT
TTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGCCATCTTCAAGATGT
CTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGT
TCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGG
CTAGGCAAGCCTGGAAACACAGCAAATCGACTGGTGTTGATGAAACAGAT
GCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAGCATT
CCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACCCCC
GTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTT
GTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAATAA
GGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCANNNNNAATTCAACA
TTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTCCCG
GGTGAAGTTACCATAGCCGACGCAGTCTTTGGAGCCAATCCTTCAATCAA
TCCCGATTTTCTTGGCAAGGCATTCCA
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