CK936749

Overview
NameCK936749
Unique NameCK936749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_SYNWW (Anthranilate phosphoribosyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=trpD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.920e-11
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   39 LTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            L   EA  +   LL+E   E   +AFL  LR + E+  E+ G  +A+ + A  V+   + +D  GTGGDG  T NIST ++++VA+CG  VAK G+
Sbjct:   15 LNSEEAYLTARMLLHEDIPEIKAAAFLSALRTRKESQEELTGFVQALYEEAKMVDCGMEVLDTCGTGGDGLGTFNISTASALVVASCGVAVAKHGN 110          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_PROM2 (Anthranilate phosphoribosyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=trpD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.920e-11
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    3 NELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDA--VDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            +E+++ L+   DL +  +++ +   LN+   +    AFL  LRAKG T  E+  +A  ++          +   VD  GTGGDGANT NIST  + + A+CG K+AK G+
Sbjct:    8 SEILNNLLEGRDLDDLTSRSLMQRWLNDKVSDVETGAFLSALRAKGSTGVELSSMAEELLNVCDLPVARPNLYLVDTCGTGGDGANTFNISTAVAFVAASCGVKIAKHGN 117          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_PHOLL (Anthranilate phosphoribosyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=trpD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.920e-11
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   21 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAV-DIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            L +   LT+ E+Q     ++  E  E  ++A L+ ++ +GE   EI G A+A++  A+          DIVGTGGDGAN++NIST ++ + +AC  K+AK G+
Sbjct:    8 LFNAQTLTQQESQQLFAAIIQGELSEPQLAAVLISMKLRGEQPQEIAGAAQALLANALPFPRPDYTFCDIVGTGGDGANSINISTASAFVASACQIKIAKHGN 110          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_HELPG (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori (strain G27) GN=trpD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.920e-11
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    6 ELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLG-DAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            ++++ L  + DL + E +     +++E      + A L  L+ KGE+F EI   A  ++++A K    G D +D  GTGGDG  T+NIST A+++ ++ G  +AK GS
Sbjct:    3 DILNALYHQKDLNDGEVKKLFTLIIHEKVSPVQLGAILCALKIKGESFKEISVAATTLLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLPMAKHGS 110          
The following BLAST results are available for this feature:
BLAST of CK936749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 434
Match NameE-valueIdentityDescription
TRPD_SYNWW9.920e-1139.58Anthranilate phosphoribosyltransferase OS=Syntroph... [more]
TRPD_PROM29.920e-1135.45Anthranilate phosphoribosyltransferase OS=Prochlor... [more]
TRPD_PHOLL9.920e-1136.89Anthranilate phosphoribosyltransferase OS=Photorha... [more]
TRPD_HELPG9.920e-1134.26Anthranilate phosphoribosyltransferase OS=Helicoba... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936749 ID=CK936749; Name=CK936749; organism=Citrus sinensis; type=EST; length=324bp
TTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGAGGCG
GAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGGCCTT
GATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTTGGAG
AGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTATGAAGGTGGAA
GGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAA
CACAGTGAACATTTCAACTGGTGCTTCAATTCTTGTTGCAGCTTGTGGTG
CAAAAGTTGCCAAGCAAGGGAGTC
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