CK936738

Overview
NameCK936738
Unique NameCK936738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.442e-54
Identity = 79/92 (85.87%), Postives = 79/92 (85.87%), Query Frame = 2
Query:  122 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL
Sbjct:    4 FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 95          

HSP 2 Score: 78.9518 bits (193), Expect = 2.442e-54
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  438 MAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 602
            MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:  110 MAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.411e-54
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = 2
Query:  107 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            M ST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGYAHL
Sbjct:    1 MPST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHL 96          

HSP 2 Score: 78.9518 bits (193), Expect = 5.411e-54
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  438 MAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 602
            MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:  111 MAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.563e-53
Identity = 77/92 (83.70%), Postives = 78/92 (84.78%), Query Frame = 2
Query:  122 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGYAHL
Sbjct:    4 FAGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHL 95          

HSP 2 Score: 78.9518 bits (193), Expect = 1.563e-53
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  438 MAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 602
            MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:  110 MAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.712e-33
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  278 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGYAHL
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHL 40          

HSP 2 Score: 80.4925 bits (197), Expect = 4.712e-33
Identity = 43/55 (78.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  438 MAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 602
            MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   55 MAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.418e-31
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  137 TAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-NPKA--KSYYLFDGYAHL 397
            TAP             + +GAAYGTAKSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+AHL
Sbjct:    8 TAPFFGFMGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHL 97          

HSP 2 Score: 56.6102 bits (135), Expect = 1.418e-31
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 3
Query:  438 MAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 581
            +AIGIVGDAGVRA+AQQ KL+VGM            YGLIVG+IL+S+
Sbjct:  112 IAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLIVGLILTSK 159          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.793e-29
Identity = 42/71 (59.15%), Postives = 59/71 (83.10%), Query Frame = 2
Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+ HL
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHL 93          

HSP 2 Score: 51.6026 bits (122), Expect = 2.793e-29
Identity = 27/47 (57.45%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 581
            AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:  109 AIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.636e-29
Identity = 42/71 (59.15%), Postives = 59/71 (83.10%), Query Frame = 2
Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+ HL
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHL 93          

HSP 2 Score: 51.6026 bits (122), Expect = 3.636e-29
Identity = 27/47 (57.45%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 581
            AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:  109 AIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.359e-28
Identity = 40/69 (57.97%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  191 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            +GAAYGTAKS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+AHL
Sbjct:   31 LGAAYGTAKSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHL 99          

HSP 2 Score: 51.9878 bits (123), Expect = 1.359e-28
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 3
Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 578
            AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:  115 AIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.769e-28
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 2
Query:  191 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+AHL
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHL 99          

HSP 2 Score: 51.9878 bits (123), Expect = 1.769e-28
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 3
Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 578
            AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:  115 AIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.769e-28
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 2
Query:  191 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+AHL
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHL 99          

HSP 2 Score: 51.9878 bits (123), Expect = 1.769e-28
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 3
Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 578
            AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:  115 AIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
The following BLAST results are available for this feature:
BLAST of CK936738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL1_ARATH2.442e-5485.87V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_TOBAC5.411e-5483.51V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC1.563e-5383.70V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE4.712e-3397.50V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_PLECA1.418e-3161.11V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI2.793e-2959.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE3.636e-2959.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ASCSU1.359e-2857.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CAEEL1.769e-2857.97V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR1.769e-2857.97V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_F04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936738 ID=CK936738; Name=CK936738; organism=Citrus sinensis; type=EST; length=740bp
NCGGCCGGGGAGAAGTCATTAGTCTNNNCTTGAGAGAAAGAGCACGGAAC
AAATAACGAAAACAAAACACACGCTCAAGTCTCAGATCCAGTCCGCATCT
CCCAAGATGTCTTCAACATTATTCAGTGGCGATGAAACCGCTCCATTCTT
CGGCTTTCTCGGCGCCGCTGCCGCCCTAGTCTTTTCCTGTATGGGAGCTG
CGTACGGAACGGCGAAGAGTGGCGTCGGTGTGGCGTCGATGGGAGTGATG
AGGCCGGAGCTTGTGATGAAATCGATCGTGCCCGTTGTTATGGCGGGAGT
TTTGGGTATTTACGGTTTGATTATTGCTGTTATTATTAGTACCGGAATTA
ACCCTAAGGCCAAATCTTATTACCTTTTCGATGGCTACGCGCATCTCTTC
TGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGCTGGTATGGCAATTGGGA
TCGTCGGTGATGCTGGTGTCAGAGCTAATGCTCAACAGCCGAAGCTTTTC
GTTGGGATGATCCTCATTCTGATCTTTGCCGAAGCGCTGGCACTTTATGG
ACTTATTGTTGGTATCATTCTTTCTTCTCGTGCTGGTCAGTCAAGAGCAG
ACTAGAAGAGGATGCTTTGCTTGGTGGTTATTTGGCCTGTTGTGTTCCAT
TAAGAAGAATTCAGTTCATATTGCATGTGACGGGAGGTGGTAGTCTGCGT
TGGGTAGTGTTTTTCTTTTTCGACTTAAAAAATTATTGTC
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