CK936738 | Citrus Genome Database

Overview


Name	CK936738
Unique Name	CK936738
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.119e-27
Identity = 37/55 (67.27%), Postives = 49/55 (89.09%), Query Frame = 2

Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 349
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSL 79

HSP 2 Score: 55.0694 bits (131), Expect = 7.119e-27
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 581
            AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:  108 AIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.567e-26
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 2

Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+ HL
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEDYTLFNGFMHL 99

HSP 2 Score: 45.8246 bits (107), Expect = 1.567e-26
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQ 590
            AIG+VGD GVR    QP+LFVG+            YG+IV +IL++R  +
Sbjct:  115 AIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTRGSE 164

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.040e-26
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 2

Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+ HL
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEEYTLFNGFMHL 99

HSP 2 Score: 45.4394 bits (106), Expect = 2.040e-26
Identity = 21/50 (42.00%), Postives = 30/50 (60.00%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQ 590
            AIGIVGD GVR    QP+LFVG+            YG+I+ +IL+++  +
Sbjct:  115 AIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIIALILNTKGSE 164

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.503e-26
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 2

Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSY 370
            +C GA+YGTAKSGVG+ +  V RP+L++K++VPVVMAG++ IYGL+++V++S  ++ K   Y
Sbjct:   24 TCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQALY 85

HSP 2 Score: 58.9214 bits (141), Expect = 4.503e-26
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQ 590
            AIGIVGDAGVR  AQQP+LFVGM            YGLIV ++L+SRA Q
Sbjct:  107 AIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRASQ 156

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL2_ASHGO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Ashbya gossypii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.925e-26
Identity = 38/71 (53.52%), Postives = 59/71 (83.10%), Query Frame = 2

Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            S +GAA GTAKSG+G++ +G  RPEL+MKS++PVVM+G+L +YGL++AV+++ G++P  + Y LF+G+ HL
Sbjct:   29 SSLGAAIGTAKSGIGISGIGTFRPELIMKSLIPVVMSGILAVYGLVVAVLVAGGLSP-TEEYTLFNGFMHL 98

HSP 2 Score: 45.4394 bits (106), Expect = 9.925e-26
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 581
            AIGIVGD GVR    QP+LFVG+            YG+I+ +IL++R
Sbjct:  114 AIGIVGDVGVRKFMHQPRLFVGIVLILIFAEVLGLYGMIIALILNTR 160

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.832e-25
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 2

Query:  191 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            MGAAYGTAK+ VG+++MGVM+P+LV+K+ +PV+ AGV+ IYGLII VI+  GI P A +Y L   +  L
Sbjct:   45 MGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDL 112

HSP 2 Score: 53.1434 bits (126), Expect = 2.832e-25
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  438 MAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 578
            MAIGIVGD+GVRA  QQPKL+V M            YGLI+GI+LSS
Sbjct:  127 MAIGIVGDSGVRAFGQQPKLYVIMMLILIFSEALGLYGLIIGILLSS 173

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL2_DEBHA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces hansenii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.849e-25
Identity = 38/71 (53.52%), Postives = 60/71 (84.51%), Query Frame = 2

Query:  185 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            SC GAA GTAKSG+G++ +G  +PEL+MKS++PVVM+G+L +YGL+++V+I+ G++P  ++Y LF+G+ HL
Sbjct:   29 SCAGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLSP-TENYSLFNGFMHL 98

HSP 2 Score: 42.743 bits (99), Expect = 2.849e-25
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 581
            +IGIVGD GVR    QP+LFVG+            YG+I+ +IL+++
Sbjct:  114 SIGIVGDEGVRQFMHQPRLFVGIVLILIFAEVLGLYGMIIALILNTK 160

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.800e-24
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 2

Query:  194 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYA 391
            G+AYGTAK+G G+ASM V RP+LVMK+I+PVVMAG++ IYGL++AVI+S  + P   +Y + + ++
Sbjct:   40 GSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFS 105

HSP 2 Score: 48.9062 bits (115), Expect = 1.800e-24
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 578
            AIGI GDAGVRA +QQP++FVGM            YG+IV +IL +
Sbjct:  123 AIGIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALILGA 168

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.976e-24
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 2

Query:  191 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSY 370
            +GAAYGTAKSGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +  K   Y
Sbjct:   26 LGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALY 85

HSP 2 Score: 57.3806 bits (137), Expect = 3.976e-24
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQ 590
            AIGIVGDAGVR ++QQP+LFVGM            YGLIV ++L+SRA Q
Sbjct:  107 AIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQ 156

[Close]

BLAST of CK936738 vs. ExPASy Swiss-Prot
Match: VATL_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.175e-24
Identity = 34/68 (50.00%), Postives = 54/68 (79.41%), Query Frame = 2

Query:  194 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHL 397
            GAAYGTAK+GVG+++MGV+RP+L++K+ +PVVMAG++ IYGL+++V+IS  +    +   L+ G+  L
Sbjct:   28 GAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLK---QILSLYSGFIQL 92

HSP 2 Score: 53.5286 bits (127), Expect = 5.175e-24
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  441 AIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 584
            AIGIVGDAGVR  AQQP+LFV M            YGLIV ++L++RA
Sbjct:  108 AIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLLNTRA 155

The following BLAST results are available for this feature:

BLAST of CK936738 vs. ExPASy Swiss-Prot

BLAST of CK936738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
VATL_TORMA	7.119e-27	67.27	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL2_YEAST	1.567e-26	56.34	V-type proton ATPase subunit c' OS=Saccharomyces c...	[more]
VATL2_CANGA	2.040e-26	56.34	V-type proton ATPase 16 kDa proteolipid subunit 2 ...	[more]
VATL_CANTR	4.503e-26	51.61	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL2_ASHGO	9.925e-26	53.52	V-type proton ATPase 16 kDa proteolipid subunit 2 ...	[more]
VATL_DICDI	2.832e-25	56.52	V-type proton ATPase proteolipid subunit OS=Dictyo...	[more]
VATL2_DEBHA	2.849e-25	53.52	V-type proton ATPase 16 kDa proteolipid subunit 2 ...	[more]
VATL1_CAEEL	1.800e-24	54.55	V-type proton ATPase 16 kDa proteolipid subunit 1 ...	[more]
VATL1_YEAST	3.976e-24	51.67	V-type proton ATPase subunit c OS=Saccharomyces ce...	[more]
VATL_SCHPO	5.175e-24	50.00	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004518_F04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_F04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936738 ID=CK936738; Name=CK936738; organism=Citrus sinensis; type=EST; length=740bp
NCGGCCGGGGAGAAGTCATTAGTCTNNNCTTGAGAGAAAGAGCACGGAAC
AAATAACGAAAACAAAACACACGCTCAAGTCTCAGATCCAGTCCGCATCT
CCCAAGATGTCTTCAACATTATTCAGTGGCGATGAAACCGCTCCATTCTT
CGGCTTTCTCGGCGCCGCTGCCGCCCTAGTCTTTTCCTGTATGGGAGCTG
CGTACGGAACGGCGAAGAGTGGCGTCGGTGTGGCGTCGATGGGAGTGATG
AGGCCGGAGCTTGTGATGAAATCGATCGTGCCCGTTGTTATGGCGGGAGT
TTTGGGTATTTACGGTTTGATTATTGCTGTTATTATTAGTACCGGAATTA
ACCCTAAGGCCAAATCTTATTACCTTTTCGATGGCTACGCGCATCTCTTC
TGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGCTGGTATGGCAATTGGGA
TCGTCGGTGATGCTGGTGTCAGAGCTAATGCTCAACAGCCGAAGCTTTTC
GTTGGGATGATCCTCATTCTGATCTTTGCCGAAGCGCTGGCACTTTATGG
ACTTATTGTTGGTATCATTCTTTCTTCTCGTGCTGGTCAGTCAAGAGCAG
ACTAGAAGAGGATGCTTTGCTTGGTGGTTATTTGGCCTGTTGTGTTCCAT
TAAGAAGAATTCAGTTCATATTGCATGTGACGGGAGGTGGTAGTCTGCGT
TGGGTAGTGTTTTTCTTTTTCGACTTAAAAAATTATTGTC