CK936734

Overview
NameCK936734
Unique NameCK936734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_DROME (Thymidylate synthase OS=Drosophila melanogaster GN=Ts PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 8.066e-54
Identity = 98/151 (64.90%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMAN--GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ I+NNP+DRRI++SAWNP D+  MALPPCH  A+FY++   GELSCQ+YQRSADMGLGVPFNIASYALLT MIAHV  L PGDF+H +GD HVY NHV PL+EQL++ P+PFP L I  + +DI+ F  EDF+++ Y+PH KI+M MAV
Sbjct:  171 IDTIRNNPSDRRIIMSAWNPLDIPKMALPPCHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFNIASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQVQDIEDFRFEDFQIVDYNPHPKIQMDMAV 321          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_PNECA (Thymidylate synthase OS=Pneumocystis carinii GN=THYA PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.828e-53
Identity = 93/155 (60.00%), Postives = 120/155 (77.42%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMA------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I KI+ +P DRR++LSAWNP+DL+ MALPPCHMF +FY+         ELSCQ+YQRS DMGLGVPFNIASYALLTCMIAHVCDL PGDFIHV+GD H+Y++H+  L++QL + P+PFP L +N    DI+ F  +DF +  Y P++ I+MKM++
Sbjct:  143 IQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_HHV8 (Thymidylate synthase OS=Human herpesvirus 8 GN=70 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.426e-52
Identity = 90/149 (60.40%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            ++ IKNNP+DRRI++ AWNP+DL LMALPPCH+  +FY+A+GELSCQ+YQRS DMGLGVPFNIASY+LLT M+AHV  L PG+FIH +GDAH+Y+ H+ PL  QL + P+PFP L+I      ++ F  +DF+L+ Y PH  I M+MAV
Sbjct:  189 VDLIKNNPHDRRIIMCAWNPADLSLMALPPCHLLCQFYVADGELSCQLYQRSGDMGLGVPFNIASYSLLTYMLAHVTGLRPGEFIHTLGDAHIYKTHIEPLRLQLTRTPRPFPRLEILRSVSSMEEFTPDDFRLVDYCPHPTIRMEMAV 337          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_PARTE (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Paramecium tetraurelia GN=GSPATT00019973001 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.682e-51
Identity = 92/149 (61.74%), Postives = 119/149 (79.87%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  +KNNP+ RRI+LSAWNP DLK MALPPCH+ ++F++ANG+LSC MYQRS D GLG+PFNIASYALLT M+A  C+L  G+F+HV+GD H+Y NHV  L++Q++++P PFP+LKI   K   D +  EDF+L+GY+ H KIEMKMAV
Sbjct:  315 IQLLKNNPDSRRIILSAWNPIDLKQMALPPCHVMSQFFVANGKLSCMMYQRSCDFGLGIPFNIASYALLTYMLAKECNLNLGEFVHVLGDTHIYSNHVEALKKQIERVPYPFPLLKIKGNKSLFD-YTYEDFELVGYNAHDKIEMKMAV 462          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BOVIN (Thymidylate synthase OS=Bos taurus GN=TYMS PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.424e-50
Identity = 100/187 (53.48%), Postives = 121/187 (64.71%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQ--------------------------------------LQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NPNDRRI+L AWNP DL LMALPPCH   +FY+ NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ DL PGDF+H +GDAH+Y NH+ PL+ Q                                      LQ+ P+PFP LKI  + + ID F AEDF++ GY+P+  I+M+MAV
Sbjct:  168 IDTIKTNPNDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITDLKPGDFVHTLGDAHIYLNHIEPLKTQALMELRGQSSRSLDGDGQAGTSRWAPVATDTERDRCCELQREPRPFPKLKILRKVETIDDFQAEDFQIEGYNPNPTIKMEMAV 354          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_HSVAT (Thymidylate synthase OS=Herpesvirus ateles GN=TS PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.228e-50
Identity = 92/149 (61.74%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            IN I  NP DRR+++ AWN  D+  MALPPCH+ ++FY+ +G+LSCQ+YQRSADMGLGVPFNIASY+LLTCMIAHV DL PG+FIH +GDAHVY NHV  L EQL + P+PFP LK   +   ID F A D  L  Y+P+  I+M MAV
Sbjct:  142 INTIHTNPTDRRMLMCAWNVLDVPKMALPPCHVLSQFYVCDGKLSCQLYQRSADMGLGVPFNIASYSLLTCMIAHVTDLVPGEFIHTLGDAHVYVNHVDALTEQLTRTPRPFPTLKFARKVASIDDFKANDIILENYNPYPSIKMPMAV 290          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_YEAST (Thymidylate synthase OS=Saccharomyces cerevisiae GN=TMP1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.574e-49
Identity = 93/158 (58.86%), Postives = 121/158 (76.58%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMA---NGE------LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+K+K NP DRRI++SAWNP+D   MALPPCH+F++FY++    GE      LSC +YQRS DMGLGVPFNIASYALLT MIA V D+ PG+FIH +GDAHVY++H+  L+EQ+ + P+PFP LKI  + KDID F   DF++  Y+PH +I+MKM+V
Sbjct:  147 IHKLKTNPYDRRIIMSAWNPADFDKMALPPCHIFSQFYVSFPKEGEGSGKPRLSCLLYQRSCDMGLGVPFNIASYALLTRMIAKVVDMEPGEFIHTLGDAHVYKDHIDALKEQITRNPRPFPKLKIKRDVKDIDDFKLTDFEIEDYNPHPRIQMKMSV 304          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_VZVO (Thymidylate synthase OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF13 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 88/149 (59.06%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NP  RR+++S+WNP D+ LM LPPCH   +FY+ANGELSCQ+YQRS DMGLGVPFNIA YALLT ++AHV  L  GD IH +GDAH+Y NH+  L+ QL + PKPFP LKI     DI+ F  +DF+L GY+PH  ++M+MA+
Sbjct:  153 IDTIKTNPESRRMIISSWNPKDIPLMVLPPCHTLCQFYVANGELSCQVYQRSGDMGLGVPFNIAGYALLTYIVAHVTGLKTGDLIHTMGDAHIYLNHIDALKVQLARSPKPFPCLKIIRNVTDINDFKWDDFQLDGYNPHPPLKMEMAL 301          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_VZVD (Thymidylate synthase OS=Varicella-zoster virus (strain Dumas) GN=ORF13 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 88/149 (59.06%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NP  RR+++S+WNP D+ LM LPPCH   +FY+ANGELSCQ+YQRS DMGLGVPFNIA YALLT ++AHV  L  GD IH +GDAH+Y NH+  L+ QL + PKPFP LKI     DI+ F  +DF+L GY+PH  ++M+MA+
Sbjct:  153 IDTIKTNPESRRMIISSWNPKDIPLMVLPPCHTLCQFYVANGELSCQVYQRSGDMGLGVPFNIAGYALLTYIVAHVTGLKTGDLIHTMGDAHIYLNHIDALKVQLARSPKPFPCLKIIRNVTDINDFKWDDFQLDGYNPHPPLKMEMAL 301          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_CHRVO (Thymidylate synthase OS=Chromobacterium violaceum GN=thyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 87/149 (58.39%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            ++ IK NP+ RR+++SAWNP+ +  MALPPCH   +FY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VC L PGDF+H +GDAH+Y NH+     QL + P+P P +K+NPE KD+ +F  +DF L GYDPH  I+ ++AV
Sbjct:  116 LDMIKKNPDSRRLIVSAWNPALVDQMALPPCHSLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMVAQVCGLQPGDFVHTLGDAHLYSNHLEQARLQLTRDPRPLPTMKLNPEVKDLFAFTFDDFALEGYDPHPHIKAQVAV 264          
The following BLAST results are available for this feature:
BLAST of CK936734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TYSY_DROME8.066e-5464.90Thymidylate synthase OS=Drosophila melanogaster GN... [more]
TYSY_PNECA6.828e-5360.00Thymidylate synthase OS=Pneumocystis carinii GN=TH... [more]
TYSY_HHV84.426e-5260.40Thymidylate synthase OS=Human herpesvirus 8 GN=70 ... [more]
DRTS_PARTE1.682e-5161.74Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_BOVIN1.424e-5053.48Thymidylate synthase OS=Bos taurus GN=TYMS PE=2 SV... [more]
TYSY_HSVAT9.228e-5061.74Thymidylate synthase OS=Herpesvirus ateles GN=TS P... [more]
TYSY_YEAST1.574e-4958.86Thymidylate synthase OS=Saccharomyces cerevisiae G... [more]
TYSY_VZVO4.580e-4959.06Thymidylate synthase OS=Varicella-zoster virus (st... [more]
TYSY_VZVD4.580e-4959.06Thymidylate synthase OS=Varicella-zoster virus (st... [more]
TYSY_CHRVO5.981e-4958.39Thymidylate synthase OS=Chromobacterium violaceum ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_G06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936734 ID=CK936734; Name=CK936734; organism=Citrus sinensis; type=EST; length=820bp
GGGATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGTACTCTC
GGCTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACA
TGTTTGCTCGGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTAT
CAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATA
TGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCG
ATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCGGG
CCCCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAA
GATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCA
AACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTA
TAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGG
CAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGC
AGAGTTTTATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTT
AAATAGTGCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGT
GGTTCTAAGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCAACTTTCA
TTTTCCCTTGTTACATGAAAACTATCACAGTATGTACTTCTGCTCNAAGT
CTCGAATGCTCTTTTTGAAAGAGATTNNNNNNCTTGGATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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