CK936734

Overview
NameCK936734
Unique NameCK936734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_CANAL (Thymidylate synthase OS=Candida albicans GN=TMP1 PE=3 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.247e-46
Identity = 92/170 (54.12%), Postives = 118/170 (69.41%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYM-----------------ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKD----IDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I K+K NP DRRI++SAWNP D   MALPPCH+F +FY+                 A  +LSC +YQRS DMGLGVPFNIASYALLT MIAHV D+  G+FIH +GDAHVY +H+  L+EQ +++PK FP L I  E+K+    ID F  EDF+++GY+P+  I+MKM+V
Sbjct:  146 IKKLKTNPYDRRIIMSAWNPPDFAKMALPPCHVFCQFYVNFPTSSPDPNNPKQAKTAKPKLSCLLYQRSCDMGLGVPFNIASYALLTKMIAHVVDMDCGEFIHTLGDAHVYLDHIDALKEQFERIPKQFPKLVIKEERKNEIKSIDDFKFEDFEIVGYEPYPPIKMKMSV 315          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BRASB (Thymidylate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=thyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.629e-46
Identity = 84/149 (56.38%), Postives = 111/149 (74.50%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NP+ RR++++AWNP+D++ MALPPCH   +FY+ NG+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+F+H  GD H+Y NHV     QL + P+  P + +NP+ KDI +F  EDF L GYDPH  I+ ++AV
Sbjct:  116 IDMIKRNPDSRRLIVTAWNPADVEKMALPPCHCLFQFYVVNGKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKPGEFVHSFGDVHLYSNHVEQARLQLTRAPRSLPTMTLNPDVKDIFAFRYEDFALAGYDPHPHIKAEVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_RHOP2 (Thymidylate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=thyA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.127e-46
Identity = 85/149 (57.05%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            ++ I+ NP+ RR++++AWNP+D++ MALPPCH   +FY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PGDFIH +GDAH+Y NH+     QL + P+  P + INP   DI  F  EDF L GYDPH  I+ ++AV
Sbjct:  116 VDMIRRNPDSRRLIVTAWNPADVEKMALPPCHCLFQFYVANGRLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKPGDFIHTLGDAHLYSNHLEQARLQLTRAPRALPAMAINPAVTDIFGFRYEDFTLHGYDPHPHIKAEVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BRASO (Thymidylate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=thyA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.779e-46
Identity = 82/149 (55.03%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            ++ I+ NP+ RR++++AWNP+D++ MALPPCH   +FY+ANG+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L  G+F+H  GD H+Y NH+     QL + P+P P + +NP+ KDI +F  EDF L GYDPH  I+ ++AV
Sbjct:  116 VDMIRRNPDSRRLIVTAWNPADVEKMALPPCHCLFQFYVANGKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKLGEFVHSFGDVHLYSNHIEQARLQLSRTPRPLPTMTLNPDVKDIFAFRYEDFALAGYDPHPHIKAEVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_TRYCR (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Trypanosoma cruzi PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.779e-46
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  +K NP+DRR++ +AWNPS L  MALPPCH+ A+FY++NGELSC +YQRS DMGLGVPFNIASYALLT +IA    L PG+ +H +GDAHVY NHV P  EQL+++P+ FP L    E++ ++ +   D ++I Y P+  I MKMAV
Sbjct:  373 VETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_RHIEC (Thymidylate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=thyA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.739e-46
Identity = 85/149 (57.05%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  I NNPN RR ++SAWNP+++  MALPPCH   +FY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L  GDF+H +GDAH+Y NH    + QL + PKP P ++INPE KDI  F  +DF+LIGY+    I+  +AV
Sbjct:  116 VKGIVNNPNSRRHIVSAWNPAEVDQMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKGGDFVHTLGDAHLYHNHFDQAKLQLTRRPKPLPFMRINPEVKDIFGFTFDDFELIGYEADASIKAPIAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_PSEMY (Thymidylate synthase OS=Pseudomonas mendocina (strain ymp) GN=thyA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.739e-46
Identity = 84/149 (56.38%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  I+ NP+ RR+++SAWNP+ ++ MALPPCH   +FY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VCDL PG+FI   GD H+Y NH+   + QL + P P P +K+NPE KD+ +F  EDF+L+GY+ H  I+  +AV
Sbjct:  116 IEMIRKNPDSRRLIVSAWNPALVEQMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVCDLQPGEFIWTGGDCHLYANHIEQADLQLTRQPLPLPTMKLNPEVKDLLAFRFEDFELVGYEAHPHIKAPVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BREBN (Thymidylate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=thyA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.190e-46
Identity = 84/149 (56.38%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I++IK NP+ RR+++SAWNP++L  MALPPCH+  +FY+ANG+LSCQ+YQRS D  LGVPFNIASYALLT M+AHV  L  GDF+H IGDAH+Y NH+  ++ QL + PKP P L +NP+   I  F  ED +++GY+ H  I+ ++AV
Sbjct:  116 IDEIKRNPDSRRLIVSAWNPAELDKMALPPCHLLFQFYVANGKLSCQLYQRSGDTFLGVPFNIASYALLTHMVAHVTGLEVGDFVHTIGDAHLYLNHIEQVKLQLTREPKPLPKLVLNPDVTSIFDFKYEDIEIVGYESHPHIKGEVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BACHK (Thymidylate synthase OS=Bacillus thuringiensis subsp. konkukian GN=thyA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.190e-46
Identity = 82/149 (55.03%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  IK  P+ RR+++SAWNP D+  MALPPCH   +FY+A+G+LSCQ+YQRS D+ LG+PFNIASY+LLT +IAH C L  G+F+H IGDAH+Y NH   +E+QL + P+PFP L +NP+ K +  F  ED  + GYDPH  I+  +AV
Sbjct:  170 IEMIKKTPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSGDIFLGIPFNIASYSLLTHLIAHECGLEVGEFVHTIGDAHIYTNHFEQVEKQLAREPRPFPKLTLNPDVKSVFDFEMEDLTIEGYDPHPAIKAPVAV 318          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BACCZ (Thymidylate synthase OS=Bacillus cereus (strain ZK / E33L) GN=thyA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.190e-46
Identity = 82/149 (55.03%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  IK  P+ RR+++SAWNP D+  MALPPCH   +FY+A+G+LSCQ+YQRS D+ LG+PFNIASY+LLT +IAH C L  G+F+H IGDAH+Y NH   +E+QL + P+PFP L +NP+ K +  F  ED  + GYDPH  I+  +AV
Sbjct:  170 IEMIKKTPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSGDIFLGIPFNIASYSLLTHLIAHECGLEVGEFVHTIGDAHIYTNHFEQVEKQLAREPRPFPKLTLNPDVKSVFDFEMEDLTIEGYDPHPAIKAPVAV 318          
The following BLAST results are available for this feature:
BLAST of CK936734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TYSY_CANAL1.247e-4654.12Thymidylate synthase OS=Candida albicans GN=TMP1 P... [more]
TYSY_BRASB1.629e-4656.38Thymidylate synthase OS=Bradyrhizobium sp. (strain... [more]
TYSY_RHOP22.127e-4657.05Thymidylate synthase OS=Rhodopseudomonas palustris... [more]
TYSY_BRASO2.779e-4655.03Thymidylate synthase OS=Bradyrhizobium sp. (strain... [more]
DRTS_TRYCR2.779e-4655.70Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_RHIEC4.739e-4657.05Thymidylate synthase OS=Rhizobium etli (strain CFN... [more]
TYSY_PSEMY4.739e-4656.38Thymidylate synthase OS=Pseudomonas mendocina (str... [more]
TYSY_BREBN6.190e-4656.38Thymidylate synthase OS=Brevibacillus brevis (stra... [more]
TYSY_BACHK6.190e-4655.03Thymidylate synthase OS=Bacillus thuringiensis sub... [more]
TYSY_BACCZ6.190e-4655.03Thymidylate synthase OS=Bacillus cereus (strain ZK... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_G06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936734 ID=CK936734; Name=CK936734; organism=Citrus sinensis; type=EST; length=820bp
GGGATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGTACTCTC
GGCTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACA
TGTTTGCTCGGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTAT
CAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATA
TGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCG
ATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCGGG
CCCCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAA
GATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCA
AACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTA
TAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGG
CAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGC
AGAGTTTTATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTT
AAATAGTGCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGT
GGTTCTAAGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCAACTTTCA
TTTTCCCTTGTTACATGAAAACTATCACAGTATGTACTTCTGCTCNAAGT
CTCGAATGCTCTTTTTGAAAGAGATTNNNNNNCTTGGATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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