CK936734

Overview
NameCK936734
Unique NameCK936734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_LACCA (Thymidylate synthase OS=Lactobacillus casei GN=thyA PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I +IK +P  RR+++SAWNP D+  MALPPCH   +FY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT ++AH C L  G+FIH  GDAH+Y NH+  ++EQL + P+P P L++NP+K DI  F  +D KL+ YDP+  I+  +AV
Sbjct:  168 IEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_ENTFA (Thymidylate synthase OS=Enterococcus faecalis GN=thyA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 83/149 (55.70%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  IK NP+ RR+++SAWNP D+  MALPPCH   +FY+  G+LSCQ+YQRSAD+ LGVPFNIASYALLT +IAH   L  G+F+H +GDAH+Y+NHV  ++EQL +  + FP L +NP+K  +  F  ED K+ GYDPH  I+  +AV
Sbjct:  167 IEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYDPHPTIKAPIAV 315          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_CRYNE (Thymidylate synthase OS=Cryptococcus neoformans GN=TMP1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 94/160 (58.75%), Postives = 114/160 (71.25%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMA---------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKK---DIDSFVAEDFKLIGYDPHQKIEMKMA 447
            I+ IKNNP DRRI+LSAWNP DL LMALPPCHMF +F+++           +LSC MYQRS D+GLGVPFNIASYALLT MIA + D  P +FI  +GDAHVYR+HV PL+ QL++ P+ FP LK    K+   DID F  EDF + GY P  KI+MKM+
Sbjct:  157 IDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMS 316          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_CLOCE (Thymidylate synthase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=thyA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.938e-45
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I++IKNNP+ RR+++S+WN  +++ MALPPCH F +FY+ NG LSC +YQRSAD+ +GVPFNIASYAL T MIA  C L  G+F+H +GDAH+Y NHV  ++ QL + P+P P + INP+ KD+  F   DF L  YDPH  I+  +AV
Sbjct:  116 IDQIKNNPDSRRLIVSSWNVGEIEKMALPPCHCFYQFYVVNGTLSCMLYQRSADVFIGVPFNIASYALFTMMIAQSCGLRAGEFVHTLGDAHIYLNHVEQVKLQLSRDPRPLPKMNINPDIKDLFQFKYSDFTLTDYDPHPHIKGAVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_CHRSD (Thymidylate synthase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=thyA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.938e-45
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            + +IK NP+ RR+++SAWNP+ +  MALPPCH   +FY+A G LSCQ+YQRSAD+ LGVPFNIASYALLT M+A  CDLAPG+F+H +GDAH+Y NH+     QL + P+  P L +NP  KD+ +F  +D  +  YDPH  I+ ++AV
Sbjct:  116 VEQIKRNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVAEGRLSCQLYQRSADIFLGVPFNIASYALLTHMVAQACDLAPGEFVHTLGDAHLYLNHLEQARLQLSREPRALPRLVLNPRVKDVFAFTFDDIAIEDYDPHPHIKAEVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BACV8 (Thymidylate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=thyA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.938e-45
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  IK+NP+ RRI++SAWN +DL  M LPPCH F +FY+ANG LS Q+YQRSAD  LGVPFNIASYALL  M+A V  L  GDF+H +GD H+Y NH+  ++ QL + P+P P +KINP+ KDI SF  EDF+L+ YDP   I  K++V
Sbjct:  116 IETIKHNPDSRRIIVSAWNVADLNNMNLPPCHAFFQFYVANGRLSLQLYQRSADTFLGVPFNIASYALLLQMVAQVTGLQTGDFVHTLGDTHIYTNHLEQVKLQLSREPRPLPQMKINPDIKDIFSFKYEDFELVNYDPWPHIAGKVSV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BACHD (Thymidylate synthase OS=Bacillus halodurans GN=thyA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.938e-45
Identity = 78/149 (52.35%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  IK+ P+ RR+++SAWN ++++ MAL PCH   +FY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA VCDL  G+F+H  GDAH+Y NH+  ++ QL + P+P P +++NPE + +  F  +DF+L+GYDPH  I+ +++V
Sbjct:  116 VEAIKHQPDSRRLIVSAWNAAEIEDMALAPCHCLFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTKMIAQVCDLEEGEFVHTFGDAHIYLNHIEQVKLQLTREPRPLPEMRLNPEVRSLFDFTFDDFELVGYDPHPHIKGEVSV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_FLAJ1 (Thymidylate synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=thyA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.167e-44
Identity = 92/171 (53.80%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDL-------------KLMALPPCHMFARFYMAN---------GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I ++K NPN RR+++SAWNPS L                ALPPCH F +FY+A+         G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA VCDL PG+FIH  GDAH+Y NH   LE QL + PKP P + +NPE K+I  F  +DF L+ YDPH  I+  +AV
Sbjct:  113 ITELKTNPNSRRMIVSAWNPSVLPDTKKSFEENVANNKAALPPCHAFFQFYVASPDLEKGETKGKLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVCDLEPGEFIHTFGDAHIYNNHFEQLELQLSREPKPLPKMILNPEIKNIFDFDYDDFTLVDYDPHPAIQGSVAV 283          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_XYLFA (Thymidylate synthase OS=Xylella fastidiosa GN=thyA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.991e-44
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            + +IK NP+ RR+V+SAWN +DL  MAL PCH   +FY+ANG+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  LA GDF+H +GDAH+Y NHV     QL+++P+P P+L +NP   D+  F  +D  + GYDP+  I+  +AV
Sbjct:  116 LEEIKRNPDSRRLVISAWNVADLPQMALVPCHALFQFYVANGKLSCQLYQRSADIFLGVPFNIASYALLTHMLAQVTGLAVGDFVHTLGDAHLYANHVEQASVQLERVPRPQPVLMLNPAVTDLFDFTYDDIVIEGYDPYPAIKAPVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BARHE (Thymidylate synthase OS=Bartonella henselae GN=thyA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.991e-44
Identity = 82/146 (56.16%), Postives = 107/146 (73.29%), Query Frame = 1
Query:   13 IKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            IK  P+ RR+++SAWNP+ +K MALPPCH F +FY+A+G+LSCQ+YQRSAD+ LG+PFNIASYALLT MIA V  L  GDFIH +GDAH+Y NH    + QL ++P   P ++INP   D+ SF  EDF+L+ YD    I+  +AV
Sbjct:  119 IKKTPDSRRLIVSAWNPASIKEMALPPCHCFFQFYVADGKLSCQLYQRSADIFLGIPFNIASYALLTMMIAQVSGLKVGDFIHTLGDAHLYSNHFEQAQHQLSRIPNALPFMRINPAVTDLFSFKFEDFELLNYDAQPHIKAPIAV 264          
The following BLAST results are available for this feature:
BLAST of CK936734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TYSY_LACCA5.240e-4555.03Thymidylate synthase OS=Lactobacillus casei GN=thy... [more]
TYSY_ENTFA5.240e-4555.70Thymidylate synthase OS=Enterococcus faecalis GN=t... [more]
TYSY_CRYNE5.240e-4558.75Thymidylate synthase OS=Cryptococcus neoformans GN... [more]
TYSY_CLOCE8.938e-4554.36Thymidylate synthase OS=Clostridium cellulolyticum... [more]
TYSY_CHRSD8.938e-4554.36Thymidylate synthase OS=Chromohalobacter salexigen... [more]
TYSY_BACV88.938e-4557.72Thymidylate synthase OS=Bacteroides vulgatus (stra... [more]
TYSY_BACHD8.938e-4552.35Thymidylate synthase OS=Bacillus halodurans GN=thy... [more]
TYSY_FLAJ11.167e-4453.80Thymidylate synthase OS=Flavobacterium johnsoniae ... [more]
TYSY_XYLFA1.991e-4455.70Thymidylate synthase OS=Xylella fastidiosa GN=thyA... [more]
TYSY_BARHE1.991e-4456.16Thymidylate synthase OS=Bartonella henselae GN=thy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_G06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936734 ID=CK936734; Name=CK936734; organism=Citrus sinensis; type=EST; length=820bp
GGGATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGTACTCTC
GGCTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACA
TGTTTGCTCGGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTAT
CAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATA
TGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCG
ATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCGGG
CCCCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAA
GATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCA
AACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTA
TAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGG
CAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGC
AGAGTTTTATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTT
AAATAGTGCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGT
GGTTCTAAGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCAACTTTCA
TTTTCCCTTGTTACATGAAAACTATCACAGTATGTACTTCTGCTCNAAGT
CTCGAATGCTCTTTTTGAAAGAGATTNNNNNNCTTGGATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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