CK936734

Overview
NameCK936734
Unique NameCK936734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_LEIMA (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Leishmania major PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.882e-44
Identity = 82/151 (54.30%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMAN--GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  IK NPNDRR++++AWNP  L+ MALPPCH+ A+FY+     ELSC +YQRS DMGLGVPFNIASYALLT +IA    L PG+ +H +GDAHVYRNHV  L+ QL+++P  FP L    E++ ++ +   D ++I Y PH  I+M+MAV
Sbjct:  370 VETIKTNPNDRRLLVTAWNPCALQKMALPPCHLLAQFYVNTDTSELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYRNHVDALKAQLERVPHAFPTLIFKEERQYLEDYELTDMEVIDYVPHPAIKMEMAV 520          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_LACS1 (Thymidylate synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=thyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.291e-43
Identity = 83/149 (55.70%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I  IKNNP+ RR++++AWNP D+ L ALPPCH   +FY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA    L  G+F+H +GDAH+Y NH+  + EQLQ+ P   P L +NPEKK+I  F  ED K+  Y  H  I+  +AV
Sbjct:  170 IETIKNNPDSRRMIVTAWNPEDVPLSALPPCHTLFQFYVNDGKLSCQLYQRSADVFLGVPFNIASYALLTHMIARETGLEVGEFVHTLGDAHIYLNHLDQVNEQLQRKPNDAPTLWLNPEKKNIMDFEMEDIKVKNYHSHSAIKAPVAV 318          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_AGABI (Thymidylate synthase OS=Agaricus bisporus GN=tms1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.291e-43
Identity = 91/156 (58.33%), Postives = 108/156 (69.23%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYM------ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILK-INPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I KIK NP DRRI+LSAWNP D+  MALPPCHM  +FY+      A  ELSC M+QRSAD+GLG+PFNIASYALLT MIAHV      + I  +GDAHVYR+HV  LE QLQ+ P+PFP L+       DI+ F   DF + GY+PH  I MKM+V
Sbjct:  141 IRKIKENPTDRRIILSAWNPKDIPSMALPPCHMLCQFYVHLPADTAKPELSCLMFQRSADLGLGIPFNIASYALLTHMIAHVTGTTARELIIQLGDAHVYRDHVEALEVQLQREPRPFPKLRWARDGITDIEDFEYSDFVIEGYNPHPSIAMKMSV 296          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_DEIDV (Thymidylate synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=thyA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.686e-43
Identity = 78/149 (52.35%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            + +I+  P+ RR+++SAWN  +++ MALPPCH F +FY+A+G LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FI   GD H+Y NH+    +QL + P+  P++++NP+ +++D F  EDF L GYDPH  I+  +AV
Sbjct:  116 VEQIRRTPDSRRLIVSAWNVGEIEQMALPPCHAFFQFYVADGRLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVTGLKPGEFIWTGGDCHLYTNHLEQARKQLTREPRTLPVMRLNPDVRELDGFRFEDFTLEGYDPHPGIKAPVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_PARD8 (Thymidylate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=thyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 83/149 (55.70%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  IK+NP+ RRI++SAWN +DL  M LPPCH F +FY+ANG LS Q+YQRSAD+ LGVPFNIASYALL  M+A    L  GDF+H +GDAH+Y NH+  ++ QL + P+  P ++INP+ K I  F  EDF L GYDPH  I+ ++AV
Sbjct:  116 VETIKHNPDSRRIIVSAWNVADLDNMNLPPCHAFFQFYVANGRLSLQLYQRSADIFLGVPFNIASYALLLQMMAQATGLKAGDFVHTLGDAHIYSNHLEQVKLQLTREPRALPRMEINPDVKSIFDFKFEDFNLTGYDPHPHIKGEVAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_OCHA4 (Thymidylate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=thyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  +  NPN RR+++SAWNP+ +  MALPPCH   +FY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL ++PK  P + INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  116 LKMLHGNPNSRRLIVSAWNPALVDEMALPPCHCLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVAGLKPGEFIHTLGDAHIYANHFDQARLQLTRIPKKLPTMWINPDVKDLFAFRFEDFQLEGYEADPTIKAPIAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BRUSU (Thymidylate synthase OS=Brucella suis GN=thyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  +  NP  RR+++SAWNP+ +  MALPPCH   +FY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL + PK  P++ INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  116 LKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BRUSI (Thymidylate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=thyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  +  NP  RR+++SAWNP+ +  MALPPCH   +FY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL + PK  P++ INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  116 LKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BRUO2 (Thymidylate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=thyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  +  NP  RR+++SAWNP+ +  MALPPCH   +FY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL + PK  P++ INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  116 LKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 264          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_BRUME (Thymidylate synthase OS=Brucella melitensis GN=thyA PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            +  +  NP  RR+++SAWNP+ +  MALPPCH   +FY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL + PK  P++ INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  116 LKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 264          
The following BLAST results are available for this feature:
BLAST of CK936734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
DRTS_LEIMA9.882e-4454.30Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_LACS11.291e-4355.70Thymidylate synthase OS=Lactobacillus salivarius s... [more]
TYSY_AGABI1.291e-4358.33Thymidylate synthase OS=Agaricus bisporus GN=tms1 ... [more]
TYSY_DEIDV1.686e-4352.35Thymidylate synthase OS=Deinococcus deserti (strai... [more]
TYSY_PARD82.202e-4355.70Thymidylate synthase OS=Parabacteroides distasonis... [more]
TYSY_OCHA42.202e-4355.03Thymidylate synthase OS=Ochrobactrum anthropi (str... [more]
TYSY_BRUSU2.202e-4355.03Thymidylate synthase OS=Brucella suis GN=thyA PE=3... [more]
TYSY_BRUSI2.202e-4355.03Thymidylate synthase OS=Brucella suis (strain ATCC... [more]
TYSY_BRUO22.202e-4355.03Thymidylate synthase OS=Brucella ovis (strain ATCC... [more]
TYSY_BRUME2.202e-4355.03Thymidylate synthase OS=Brucella melitensis GN=thy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_G06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936734 ID=CK936734; Name=CK936734; organism=Citrus sinensis; type=EST; length=820bp
GGGATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGTACTCTC
GGCTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACA
TGTTTGCTCGGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTAT
CAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATA
TGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCG
ATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCGGG
CCCCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAA
GATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCA
AACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTA
TAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGG
CAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGC
AGAGTTTTATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTT
AAATAGTGCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGT
GGTTCTAAGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCAACTTTCA
TTTTCCCTTGTTACATGAAAACTATCACAGTATGTACTTCTGCTCNAAGT
CTCGAATGCTCTTTTTGAAAGAGATTNNNNNNCTTGGATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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