CK936709
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.407e-25 Identity = 70/205 (34.15%), Postives = 108/205 (52.68%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHS 741 ++KFV +G A ++E +L GY G+E+ TPM T+I ++A + ++G+ G+ IR T + RFK +++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D + G++G+KV+IM P LPD +TI + Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEA 197
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.407e-25 Identity = 71/215 (33.02%), Postives = 114/215 (53.02%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPK--DEEEYV 765 ++ FV +G+ ++E L +L GY G++++VTP+ T +I+ A + V+G G+ +R +T ++ F VE+ ++V+ L A + L G+ RR Y ++R IM +GA+G EV +SGK+R R+ KF +GY+ G+P +Y+ V L+ GVLGI V+IM P LPD + I P+ D EE V Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVRIM---------PPEVTLPDNIEISEPEIVDVEEPV 206
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.401e-25 Identity = 60/182 (32.97%), Postives = 107/182 (58.79%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 672 +RKF+A+G A + + LT+EL G+ G+++ TP+ T++ I A + V+G+ G+ + +LT + + + +E+ ++V N A AE L L G R+A ++R +M+SGA GCEV+++GKL RA++ KF +GY+ G+P N ++ + + GV+G++VKI+ Sbjct: 4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.095e-25 Identity = 68/210 (32.38%), Postives = 111/210 (52.86%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 756 +R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + K + +E+ ++V N L + L G+ RR + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+ GV+G+ VKIM P LPD +TI S + +E Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITILSGEIKE 201
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.095e-25 Identity = 74/222 (33.33%), Postives = 114/222 (51.35%), Query Frame = 1 Query: 130 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIE 795 +KFV G+ EL+E L EL GY G+ ++ P T+II R +G +GR IR + VQ+RF V + +++ + L A L L G+ RRA YG LR IM +GAKG +I+SGKL RA++ KF +G + G+P +EY+ + + G +G+ V+IM P LPD + I P++ E+ +K + ++ E Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVEDELKELIGKSEDE 223
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 9.122e-25 Identity = 70/223 (31.39%), Postives = 120/223 (53.81%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIE 795 ++KFV DG A ++E ++L+ GY G+++ TPM T+I + A + V+G+ G+ IR+LT V + + ++ A++V L A A L + G R+A + +R +M +GA GCE+++SGKL R++ K +GY+ +G+PV++ +D + + G LG KV+I+ P LPD + K+ EE +LV+T +E Sbjct: 4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII---------HPDAVLPDSYRL---KNAEEL--GSLVSTPVE 210
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.556e-24 Identity = 66/203 (32.51%), Postives = 109/203 (53.69%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTI 735 +R F+ + V ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++ELT + K+ N ++ +++ + L A A+ + L G+ RR + +R +M GAKG VIVSGKL +R+++ K+ +GYM G+P E +D + L+ GV+G+ VKIM P LPD + I Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVI 194
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 2.032e-24 Identity = 65/211 (30.81%), Postives = 114/211 (54.03%), Query Frame = 1 Query: 133 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYV 765 +F+ G+ ++++E ELA GY G+E+ TPM +I+++A + V+G+ G+ IR++T+ +++RF + +++ ++V L A A+ L L G R+A + + IMESGA G E+++SGK+ R + KF GY+ +G+P E +D +++ G +G+ VKI+ P LPD I D E+ V Sbjct: 6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKII---------PPNAELPDDFEIQEDADIEDLV 205
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.654e-24 Identity = 77/214 (35.98%), Postives = 113/214 (52.80%), Query Frame = 1 Query: 127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 768 K+ F+ + +++E L + GYS VE++ TPM T +II A R+ ++G +G+ I+++T V+++ F P V + KV L A A L L G RRA Y LR IM +GA G +V VSGKLR +RA+ K+ G + SG V D A+ HVLL+ GV G++V I K+ D V I SP++ E V+ Sbjct: 9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII-------SKKSEEERPDDEVRIKSPEEVNEIVQ 213
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.527e-24 Identity = 64/213 (30.05%), Postives = 117/213 (54.93%), Query Frame = 1 Query: 118 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 756 ++ + +F+ +G+ ++++E EL GY G++V TPM T+I+++A + V+G+ G+ IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + + I+ESGA G E+++SGK+ R++ KF GY+ +G+P E +D +++ G +G+ VKI+ P LPD IH D E Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAVMKLGTIGVTVKII---------PPGAELPDDFEIHDDVDVE 202 The following BLAST results are available for this feature:
BLAST of CK936709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CK936709 ID=CK936709; Name=CK936709; organism=Citrus sinensis; type=EST; length=900bpback to top |