CK936709

Overview
NameCK936709
Unique NameCK936709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.407e-25
Identity = 70/205 (34.15%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHS 741
            ++KFV +G   A ++E    +L   GY G+E+  TPM T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D        + G++G+KV+IM          P   LPD +TI +
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEA 197          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.407e-25
Identity = 71/215 (33.02%), Postives = 114/215 (53.02%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPK--DEEEYV 765
            ++ FV +G+    ++E L  +L   GY G++++VTP+ T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+ GVLGI V+IM          P   LPD + I  P+  D EE V
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVRIM---------PPEVTLPDNIEISEPEIVDVEEPV 206          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.401e-25
Identity = 60/182 (32.97%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 672
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++VKI+
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.095e-25
Identity = 68/210 (32.38%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 756
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI S + +E
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITILSGEIKE 201          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.095e-25
Identity = 74/222 (33.33%), Postives = 114/222 (51.35%), Query Frame = 1
Query:  130 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIE 795
            +KFV  G+   EL+E L  EL   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GAKG  +I+SGKL   RA++ KF +G +   G+P +EY+       + + G +G+ V+IM          P   LPD + I  P++ E+ +K  +  ++ E
Sbjct:   12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVEDELKELIGKSEDE 223          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.122e-25
Identity = 70/223 (31.39%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIE 795
            ++KFV DG   A ++E   ++L+  GY G+++  TPM T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG KV+I+          P   LPD   +   K+ EE    +LV+T +E
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII---------HPDAVLPDSYRL---KNAEEL--GSLVSTPVE 210          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.556e-24
Identity = 66/203 (32.51%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTI 735
            +R F+ + V    ++E L  +L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+ VKIM          P   LPD + I
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVI 194          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.032e-24
Identity = 65/211 (30.81%), Postives = 114/211 (54.03%), Query Frame = 1
Query:  133 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYV 765
            +F+  G+  ++++E    ELA  GY G+E+  TPM  +I+++A +   V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D      +++ G +G+ VKI+          P   LPD   I    D E+ V
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKII---------PPNAELPDDFEIQEDADIEDLV 205          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.654e-24
Identity = 77/214 (35.98%), Postives = 113/214 (52.80%), Query Frame = 1
Query:  127 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 768
            K+ F+   +   +++E L  +    GYS VE++ TPM T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+ HVLL+ GV G++V I        K+       D V I SP++  E V+
Sbjct:    9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII-------SKKSEEERPDDEVRIKSPEEVNEIVQ 213          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.527e-24
Identity = 64/213 (30.05%), Postives = 117/213 (54.93%), Query Frame = 1
Query:  118 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 756
            ++ + +F+ +G+  ++++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T  ++ RF   +  +++  ++V+   L A   A+ L   L  G   R+A +  +  I+ESGA G E+++SGK+   R++  KF  GY+  +G+P  E +D      +++ G +G+ VKI+          P   LPD   IH   D E
Sbjct:    1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAVMKLGTIGVTVKII---------PPGAELPDDFEIHDDVDVE 202          
The following BLAST results are available for this feature:
BLAST of CK936709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS3_UNCMA1.407e-2534.1530S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METST1.407e-2533.0230S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_METB62.401e-2532.9730S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METM54.095e-2532.3830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METKA4.095e-2533.3330S ribosomal protein S3P OS=Methanopyrus kandleri... [more]
RS3_METBU9.122e-2531.3930S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_META31.556e-2432.5130S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_HALSA2.032e-2430.8130S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_IGNH42.654e-2435.9830S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_HALWD4.527e-2430.0530S ribosomal protein S3P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_A09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936709 ID=CK936709; Name=CK936709; organism=Citrus sinensis; type=EST; length=900bp
GGGGAACACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCC
ACCTCATTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAA
GCAAAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGC
GTGTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGA
CGGTTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCA
TCATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGA
ATTAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAA
TAGCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCA
TTGCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTT
CGCAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAA
GGGATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAAT
CAATGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAAT
GAATATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACT
TGGTATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAAG
GTCCTACTACCCCTCTACCTGATCTCGTAACAATCCACTCACCCAAGGAT
GAAGAGGAGTATGTCAAGCCAACATTGGTTGCTACTGATATTGAGGTCCC
AATCCAAGTGGCTTAAGGCCGAAGTGGGGTATAGTCTCATCTTCTTTGAT
ATTTTATCAATGGTATTTGAAGTGCTCTAGTTTTCATTTTTGTTGCTAAT
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