CK936634

Overview
NameCK936634
Unique NameCK936634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PIPCE (Photosystem II reaction center protein K OS=Piper cenocladum GN=psbK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIFSL  ICL+SAL+SSSF FAKLPEAYA  NPIVDVMPVIPVLFFLLA VWQ AVSFR
Sbjct:    1 MLNIFSL--ICLSSALHSSSFFFAKLPEAYALFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_OENEH (Photosystem II reaction center protein K OS=Oenothera elata subsp. hookeri GN=psbK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 51/61 (83.61%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIFSL  ICLNS LYSS F  AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQ AVSFR
Sbjct:    1 MLNIFSL--ICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 59          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_AMBTC (Photosystem II reaction center protein K OS=Amborella trichopoda GN=psbK PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.203e-20
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NIFSL+ ICL+SAL+SS F FAKLPEAYA  NPIVDVMPVIP+ FFLLAFVWQ A SFR
Sbjct:    1 MPNIFSLICICLHSALHSSGFFFAKLPEAYAVFNPIVDVMPVIPLFFFLLAFVWQAAASFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_SILLA (Photosystem II reaction center protein K OS=Silene latifolia GN=psbK PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.052e-20
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIFSL  I LNSALYSSS  FAKLPEAYAFL+PIVD MPVIP+LFFLLAFVWQ AVSFR
Sbjct:    1 MLNIFSL--IGLNSALYSSSCFFAKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ARATH (Photosystem II reaction center protein K OS=Arabidopsis thaliana GN=psbK PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.052e-20
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIF+L+ I  NS L+SS+FL AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQ AVSFR
Sbjct:    1 MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSJ (Photosystem II reaction center protein K OS=Oryza sativa subsp. japonica GN=psbK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQ AVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSI (Photosystem II reaction center protein K OS=Oryza sativa subsp. indica GN=psbK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQ AVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSA (Photosystem II reaction center protein K OS=Oryza sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQ AVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ORYNI (Photosystem II reaction center protein K OS=Oryza nivara GN=psbK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQ AVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_SECCE (Photosystem II reaction center protein K OS=Secale cereale GN=psbK PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NI SL  IC NS LY +SF FAKLPEAYA  NPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of CK936634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PSBK_PIPCE3.166e-2185.25Photosystem II reaction center protein K OS=Piper ... [more]
PSBK_OENEH9.212e-2183.61Photosystem II reaction center protein K OS=Oenoth... [more]
PSBK_AMBTC1.203e-2078.69Photosystem II reaction center protein K OS=Ambore... [more]
PSBK_SILLA2.052e-2085.25Photosystem II reaction center protein K OS=Silene... [more]
PSBK_ARATH2.052e-2078.69Photosystem II reaction center protein K OS=Arabid... [more]
PSBK_ORYSJ4.572e-2077.05Photosystem II reaction center protein K OS=Oryza ... [more]
PSBK_ORYSI4.572e-2077.05Photosystem II reaction center protein K OS=Oryza ... [more]
PSBK_ORYSA4.572e-2077.05Photosystem II reaction center protein K OS=Oryza ... [more]
PSBK_ORYNI4.572e-2077.05Photosystem II reaction center protein K OS=Oryza ... [more]
PSBK_SECCE5.971e-2075.41Photosystem II reaction center protein K OS=Secale... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_A08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936634 ID=CK936634; Name=CK936634; organism=Citrus sinensis; type=EST; length=442bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAACTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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