CK936614

Overview
NameCK936614
Unique NameCK936614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ANTFO (ATP synthase subunit alpha, chloroplastic OS=Anthoceros formosae GN=atpA PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.290e-54
Identity = 115/166 (69.28%), Postives = 123/166 (74.10%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEE++ TIYTG NGYLD LE+ QV+KFLV+LR YL TNKPQF EII STK+FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGYLDVLEVEQVKKFLVQLREYLITNKPQFVEIIRSTKVFTEQAEIILKEAIKEHTEFFLLQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PHYPA (ATP synthase subunit alpha, chloroplastic OS=Physcomitrella patens GN=atpA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.070e-53
Identity = 113/165 (68.48%), Postives = 122/165 (73.94%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 496
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q++PL VEE++ TIYTG NGYLD LE+ QV+KFLV+LR YL TNKPQF EII STK+FT                 FLLQE
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSSPLAVEEQVATIYTGVNGYLDVLEVDQVKKFLVQLREYLTTNKPQFAEIIRSTKVFTEQAEGILKEAIKEHTELFLLQE 505          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CYCTA (ATP synthase subunit alpha, chloroplastic OS=Cycas taitungensis GN=atpA PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.027e-52
Identity = 115/166 (69.28%), Postives = 122/166 (73.49%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLD+ATQNQLARGQRLRELLKQ+Q+APLTVEE+I TIY G NGYLD LEI QVRKFLV+LR YL TNKPQF EII ST+ FT                 FLL+EQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDRATQNQLARGQRLRELLKQSQSAPLTVEEQIATIYAGANGYLDILEIVQVRKFLVQLREYLITNKPQFGEIIRSTRAFTEQAEALLKEAIQEHIELFLLREQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PSINU (ATP synthase subunit alpha, chloroplastic OS=Psilotum nudum GN=atpA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.341e-52
Identity = 112/166 (67.47%), Postives = 124/166 (74.70%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLD+ATQNQLARGQRLRELLKQ+Q+APL+VEE++ TIYTG NGYLD L++ QV++FLV+LR YL TNKPQF EII STKIFT                 FLLQE+
Sbjct:  343 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDRATQNQLARGQRLRELLKQSQSAPLSVEEQVATIYTGVNGYLDILKVEQVKRFLVQLREYLVTNKPQFGEIIRSTKIFTEDAESILRVAIREYTELFLLQEK 508          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PELHO (ATP synthase subunit alpha, chloroplastic OS=Pelargonium hortorum GN=atpA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.752e-52
Identity = 112/166 (67.47%), Postives = 123/166 (74.10%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGK K                +DLDK TQ+QLARG+RLRELLKQ+QA PL VEE+IMT+YTG NGYLDSLEIGQVRKFL +LR YLK NKP+FQEIISSTK FT                 F+L+EQ
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLDLAQFTELEAFAQFATDLDKTTQSQLARGRRLRELLKQSQADPLAVEEQIMTVYTGINGYLDSLEIGQVRKFLEDLRKYLKGNKPKFQEIISSTKTFTEEAEALLKEAIQEQTELFILKEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_HUPLU (ATP synthase subunit alpha, chloroplastic OS=Huperzia lucidula GN=atpA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.695e-52
Identity = 112/166 (67.47%), Postives = 120/166 (72.29%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQ FL AD  NAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE++ TIYTG NGY D LEIGQV+KFLV+ R YL TNKP+F EII STK+FT                 FLLQEQ
Sbjct:  341 GQTFLSADSSNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGVNGYSDILEIGQVKKFLVQFREYLITNKPKFAEIICSTKVFTEQAEIILKEAIEEHTELFLLQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ANEMR (ATP synthase subunit alpha, plastid OS=Aneura mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.136e-51
Identity = 108/143 (75.52%), Postives = 116/143 (81.12%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 430
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQI+AMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEE++ TI+TG NGY D LE GQV+KFLV+LR YL TNKPQF EII STKIFT
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIRAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLGVEEQVATIHTGVNGYSDILETGQVKKFLVQLREYLPTNKPQFAEIIRSTKIFT 483          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_STAPU (ATP synthase subunit alpha, chloroplastic OS=Staurastrum punctulatum GN=atpA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.315e-51
Identity = 110/166 (66.27%), Postives = 118/166 (71.08%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPL VEE++ TIYTG NGYLD +E+ QVR+FL ELR YL TNKP+F EII   K  T                 FLLQE+
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLRELLKQSQAAPLAVEEQVATIYTGVNGYLDVIEVAQVRRFLTELRQYLGTNKPKFGEIIREKKAVTEEAESLLKAAIKEHTEAFLLQEE 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ZYGCR (ATP synthase subunit alpha, chloroplastic OS=Zygnema circumcarinatum GN=atpA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 108/165 (65.45%), Postives = 120/165 (72.73%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 496
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQAQ+APL+VE+++ TI+TG NGYLD +E+ QVR FL +LR Y+ TNKPQF EII STK FT                 FLLQ+
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLRELLKQAQSAPLSVEQQVATIFTGVNGYLDVIEVSQVRSFLTQLREYIITNKPQFGEIIRSTKTFTDEAQTILKQAIQEHTEAFLLQQ 505          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ADICA (ATP synthase subunit alpha, chloroplastic OS=Adiantum capillus-veneris GN=atpA PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 108/166 (65.06%), Postives = 121/166 (72.89%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDK TQNQLARGQRLRELLKQ+Q+APL VEE++ TIYTG NGYLD L++ QV++FLV+LR Y+ T+KP F EII STK+FT                 FLLQE+
Sbjct:  342 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKTTQNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGYLDVLDVEQVKRFLVQLREYVATSKPSFGEIIRSTKVFTEQAEALLKEAIKESTELFLLQER 507          
The following BLAST results are available for this feature:
BLAST of CK936614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_ANTFO9.290e-5469.28ATP synthase subunit alpha, chloroplastic OS=Antho... [more]
ATPA_PHYPA2.070e-5368.48ATP synthase subunit alpha, chloroplastic OS=Physc... [more]
ATPA_CYCTA1.027e-5269.28ATP synthase subunit alpha, chloroplastic OS=Cycas... [more]
ATPA_PSINU1.341e-5267.47ATP synthase subunit alpha, chloroplastic OS=Psilo... [more]
ATPA_PELHO1.752e-5267.47ATP synthase subunit alpha, chloroplastic OS=Pelar... [more]
ATPA_HUPLU8.695e-5267.47ATP synthase subunit alpha, chloroplastic OS=Huper... [more]
ATPA_ANEMR1.136e-5175.52ATP synthase subunit alpha, plastid OS=Aneura mira... [more]
ATPA_STAPU4.315e-5166.27ATP synthase subunit alpha, chloroplastic OS=Staur... [more]
ATPA_ZYGCR5.636e-5165.45ATP synthase subunit alpha, chloroplastic OS=Zygne... [more]
ATPA_ADICA5.636e-5165.06ATP synthase subunit alpha, chloroplastic OS=Adian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936614 ID=CK936614; Name=CK936614; organism=Citrus sinensis; type=EST; length=571bp
CGGGCAAATATTCTTACCTGCGGATTTATTCAATGCTGGAATCAGACCCG
CTATTAATGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATT
AAAGCTATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATT
CGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTA
CTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAG
GCCCAAGCAGCCCCTCTCACGGTGGAAGAACGGATAATGACTATTTATAC
AGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAAT
TTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCAA
GAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTTT
GCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAAT
TCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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