CK936590

Overview
NameCK936590
Unique NameCK936590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_NICTO (Photosystem II reaction center protein K OS=Nicotiana tomentosiformis GN=psbK PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.592e-22
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+M VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_NICSY (Photosystem II reaction center protein K OS=Nicotiana sylvestris GN=psbK PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.592e-22
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+M VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_CALFG (Photosystem II reaction center protein K OS=Calycanthus floridus var. glaucus GN=psbK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.303e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL  ICLNSAL+SSSF FAKLPEAYAF NPIVDVM VIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_NYMAL (Photosystem II reaction center protein K OS=Nymphaea alba GN=psbK PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.246e-21
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            M NIFSL+ ICLNSAL  S F FAKLPEAYAFLNPIVD M VIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNIFSLICICLNSALQPSGFFFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_SINAL (Photosystem II reaction center protein K OS=Sinapis alba GN=psbK PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.627e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIF+L+ IC NSAL+SS+FL AKLPEAYAFLNPIVDVM VIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_LACSA (Photosystem II reaction center protein K OS=Lactuca sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.627e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVM VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_HELAN (Photosystem II reaction center protein K OS=Helianthus annuus GN=psbK PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.627e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVM VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_CUCSA (Photosystem II reaction center protein K OS=Cucumis sativus GN=psbK PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.125e-21
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNI S + ICLNS LYSSSF  AKLPEAYAFLNPIVDVM VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_SPIOL (Photosystem II reaction center protein K OS=Spinacia oleracea GN=psbK PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL  ICLNSALYSSSF F KLPEAYAFL+PIVD M VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR 59          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_PELHO (Photosystem II reaction center protein K OS=Pelargonium hortorum GN=psbK PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            M+NIFS + I L+SALYSSSF F KLPEAYAFLNPIVDVM VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MINIFSFICIYLHSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of CK936590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PSBK_NICTO5.592e-2281.97Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_NICSY5.592e-2281.97Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_CALFG7.303e-2288.52Photosystem II reaction center protein K OS=Calyca... [more]
PSBK_NYMAL1.246e-2185.25Photosystem II reaction center protein K OS=Nympha... [more]
PSBK_SINAL1.627e-2181.97Photosystem II reaction center protein K OS=Sinapi... [more]
PSBK_LACSA1.627e-2186.89Photosystem II reaction center protein K OS=Lactuc... [more]
PSBK_HELAN1.627e-2186.89Photosystem II reaction center protein K OS=Helian... [more]
PSBK_CUCSA2.125e-2183.61Photosystem II reaction center protein K OS=Cucumi... [more]
PSBK_SPIOL3.624e-2185.25Photosystem II reaction center protein K OS=Spinac... [more]
PSBK_PELHO3.624e-2181.97Photosystem II reaction center protein K OS=Pelarg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004520_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936590 ID=CK936590; Name=CK936590; organism=Citrus sinensis; type=EST; length=378bp
TTTTGTTTTGATCGGGTCGGTTCCAACAAGTTTTTTTTGTAAACCTTACT
TTCTTTTCTTCATTTTTATCTAAAATCAATAAGATATTAATAACTCAATC
AAAATAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTT
AGTTTAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTT
ATTCGCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATG
TTATGCTAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAA
GCTGCTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCA
TGATTTATTCTAGTTCGAAAAAAAAAAA
back to top