CX675162

Overview
NameCX675162
Unique NameCX675162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.041e-33
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   35 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 409
            +S  LP+ AT+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE AD WP + SAA+ +V
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRWPSVGSAASILV 132          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.619e-32
Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 409
            LPV A   CADNTGAK + II+V+  KG   RLP+A VGDMV+ TVKKG P++RK+V+PAV++RQRK  RR DG  + F DNA VIV P G  KGS I GP+ KE A+ WP IA  A  I+
Sbjct:   12 LPVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPVAKEAAERWPGIARIAKIII 132          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 406
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 406
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.451e-31
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = 2
Query:   20 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 409
            G K +++ GLPV A + CADNTGAK L II V G KGR +R+P+A VGDMV   VK+GK DL  K   A++VRQR P+RRK+G ++ FEDNA V+VN  G  +GS   GPI KE  + WP ++  +  +V
Sbjct:   12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPIAKEAIERWPSLSVISAQVV 141          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.426e-31
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 2
Query:   20 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 409
            G++  ++ GL    TV  ADN+GAK   II + G KG L R+P A + D+VM +V+KG P++RK+   AVIVRQR P+RR DG ++ FEDNA VIVNP G  KG+ I GPI KE A+ WP++AS A  ++
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERWPKVASIATMVI 141          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.426e-31
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 406
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K +RR DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METM7 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.100e-30
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 406
            LP  A + CADNTGAK L II+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEIIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_META3 (50S ribosomal protein L14P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.100e-30
Identity = 65/120 (54.17%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 406
            LP  A + CADNTGAK L II+VKG KG   RLP+  VG +V  +VKKG P++RK+V+PA+I+RQ+K +RR DG  + FEDNA VIV P+G  KGS I GP+ KE A+ W  ++  A  I
Sbjct:   12 LPNGARLICADNTGAKELEIIAVKGYKGVARRLPAGGVGSLVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRPDGSRVKFEDNAAVIVTPEGSPKGSEIKGPVAKEAAERWAGVSRLAKII 131          
BLAST of CX675162 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.437e-30
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   47 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 406
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
The following BLAST results are available for this feature:
BLAST of CX675162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 448
Match NameE-valueIdentityDescription
RL14_METS34.041e-3352.8050S ribosomal protein L14P OS=Methanobrevibacter s... [more]
RL14_METJA2.619e-3257.8550S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_METVS4.940e-3153.3350S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA4.940e-3153.3350S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_KORCO6.451e-3151.5450S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]
RL14_SULTO8.426e-3150.7750S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_METMP8.426e-3153.3350S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METM71.100e-3053.3350S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_META31.100e-3054.1750S ribosomal protein L14P OS=Methanococcus aeolic... [more]
RL14_METM61.437e-3052.5050S ribosomal protein L14P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60C06-E12-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675162 ID=CX675162; Name=CX675162; organism=Citrus sinensis; type=EST; length=576bp
AGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATGTCACTGGGTTTGC
CAGTGGCAGCAACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTT
TACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTC
TGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAAGAAAGGGAAGCCTG
ATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCA
TGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAAGATAATGCAGGTGT
TATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAA
TTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTGCAAGTGCAGCCAAT
GCTATCGTTTAAGACATTCAAGACCGATAACCTATATCATCCTTTTTGTT
GCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGGAAGGAGTAAAGCTT
TTCTGTGAACTTTCTGTATGATTTTGTTGTTCTAGTTTTGGAAGTGGTAT
GAAAGTTTGGAGTTTTGTTGAAAAAA
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