CK936566

Overview
NameCK936566
Unique NameCK936566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  213 FEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRSA 704
            F  G LK++      +AEFIAT LF++  V + +   K  ++      G+  +A A    +FV V   A ISGGH+NPAVTLGL +   +++    FY + Q LG+     ++K          +  G  V  HG   G     G+  EII TF LVYTV+ +A D K+ +
Sbjct:   13 FSVGSLKAY------VAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK---------YVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS 168          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            EL+S SF+RA  AEF A+  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA+ YMV Q LGA+ GA V+         G LA   N +  G + G     EI  T   V  +F+  D +R+ R
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  222 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSA 704
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A ISGGH+NPAVT GL +   +++   +FY V Q LGA   A ++ GF+  G+    A   + VA G ++ +G+  E++ TF LVYTV+ +A D K+ +
Sbjct:   10 GDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATV-ACLLLGFVTHGK----AIPTHAVA-GISELEGVVFEVVITFALVYTVYATAADPKKGS 167          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 53/157 (33.76%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKR 698
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +FV V   A ISGGH+NPAVT G F+   ++L R + Y++ Q LG+I  + ++               ++V A G ++G G+G     EI+ TF LVYTV+ +A D K+
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLV----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK 167          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T   V  +F+  D +R+ R
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGR 154          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 59/164 (35.98%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  222 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSA 704
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A ISGGH+NPAVT GL +   +++   LFY + Q LGA     ++K F+  G+     G A     G ++ +G+  EI+ TF LVYTV+ +A D K+ +
Sbjct:   10 GDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLK-FVTHGKAIPTHGVA-----GISELEGVVMEIVITFALVYTVYATAADPKKGS 167          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  219 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKR 698
            PGEL      +A +AEFI+  +F++    + M   K      T   G+   + A    +FV V   A ISGGH+NPAVT G F+   +SL +A+ Y V Q LG++    ++K   G    G  +  A V A      + +  EI+ TF LVYTV+ +A D K+
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGA-----WNAVVFEIVMTFGLVYTVYATAVDPKK 168          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 53/161 (32.92%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T   V  +F+  D +R+ R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  222 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSA 704
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A  SGGH+NPAVT GL +   +++   LFY V Q LGA     +++ F+  G+    A   + V+ G T+ +G+  EI+ TF LVYTV+ +A D K+ +
Sbjct:   10 GDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLR-FVTHGK----AIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS 168          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  219 PGELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKR 698
            PGE       RA  AEF +  +F++    + M  G +  +   +  G+   + +    +FV V   A +SGGH+NPAVT G F+   ++L RA+ Y + Q LGA+    ++K   G      +   A  +++G T  + +  EI+ TF LVYTV+ +A D K+
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGG-----METAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK 168          
The following BLAST results are available for this feature:
BLAST of CK936566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
TIP1_TOBAC2.632e-1534.50Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
MIP_BOVIN2.632e-1533.54Lens fiber major intrinsic protein OS=Bos taurus G... [more]
TIP21_MAIZE5.863e-1536.59Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP1_MEDTR5.863e-1533.76Probable aquaporin TIP-type OS=Medicago truncatula... [more]
MIP_RAT5.863e-1532.92Lens fiber major intrinsic protein (Fragment) OS=R... [more]
TIP21_ORYSJ7.658e-1535.98Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP12_ORYSJ7.658e-1534.97Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_MOUSE7.658e-1532.92Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP22_MAIZE1.306e-1435.98Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP13_ARATH1.306e-1431.90Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_H12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936566 ID=CK936566; Name=CK936566; organism=Citrus sinensis; type=EST; length=721bp
GGGGATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCT
TCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAA
AGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGA
TTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCA
CCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTC
GGCATTCGAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAC
TCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCAAAACGGAG
CGCCAGGGACTCTCATGTTCC
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