CK936566

Overview
NameCK936566
Unique NameCK936566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 52/161 (32.30%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +    + G     EI  T   V  +F+  D +R+ +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQ 156          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD 689
            E+++  F+R+ I+E +A+F++++I      GV    +  S   +   A A G  +  L  C   ISG HINPAVTL L + R +S  RA  Y+  QC G I GA ++ G    G  G L    +  A      +  G E I TF++V   F +TD
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSA-ALAAWERFGVEFILTFLVVLCYFVSTD 209          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 53/161 (32.92%), Postives = 76/161 (47.20%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +  G +       EI  T   V  +F+  D +R+ R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  210 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK---GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSA 704
            ++ PG LK      A +AEFI+T +F++    + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y + Q LG+     +++   G +  G +G           G +  + L  EI+ TF LVYTV+ +A D K+ +
Sbjct:   14 VYHPGALK------AALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG---------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS 169          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  222 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 680
            GE     F+R  + E + TFLF++I V   M    + TK ST G    A A G  + V V  TAG  ISGGH+NPAVTL L +   ++L R+  Y+  Q L +     +++   G      LA   + +A G     G+ AE + TF L++ +++
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG-----LATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYA 158          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 55/164 (33.54%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVK------SNTKCSTVG-IRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSA 704
            RA +AEF++TF+F++    +++ + K      ++T  +T G +  +A A    +F  V     +SGGH+NPAVT    +  ++S+ RA++Y V Q +GAI    +++    G    G +         VA G ++  GL  EII TF LVY V+S A D KR +
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH---------VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS 178          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 57/168 (33.93%), Postives = 84/168 (50.00%), Query Frame = 3
Query:  210 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSA 704
            ++ PG LK      A  AEFI+T +F++    + M   K       +  G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y V Q LG+     +++   G    G+  G   +   G +  + L  EI+ TF LVYTV+ +A D K+ +
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTG----GQATGTFGLT--GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS 169          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 61/171 (35.67%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  219 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSN----TKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG-LGA---EIIGTFVLVYTVF-SATDAKRSA 704
            P E       +A +AEFI+T +F+     + M   K      T  S +    +A AFG  +FV V   A ISGGH+NPAVT G F+   ++L R + Y + Q LG++    ++K            GG  V A G + G G L A   EI+ TF LVYTV+ +A D K  +
Sbjct:   11 PDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK---------FATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS 170          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 53/159 (33.33%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLT--VMGVVKSNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG----LGAEIIGTFVLVYTVF-SATDAKRSA 704
            RA +AEFI+T +F++    +      +  N   +  G+   A A    +FV V   A ISGGH+NPAVT G+ L   ++L R + Y + Q LG++    ++             GG  + A G + G G    L  EI+ TF LVYTV+ +A D K  +
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL---------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS 171          
BLAST of CK936566 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 50/161 (31.06%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIRGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRSA 704
            RA +AEF +TF+F++    + + +VK   ++  S   +  +A A    +F  V  +  +SGGH+NPAV+ G  +  ++S+ RA++Y + Q LG+I  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA 170          
The following BLAST results are available for this feature:
BLAST of CK936566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
MIP_HUMAN2.228e-1432.30Lens fiber major intrinsic protein OS=Homo sapiens... [more]
BIB_DROME2.228e-1434.19Neurogenic protein big brain OS=Drosophila melanog... [more]
MIP_CAVPO2.910e-1432.92Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP11_ORYSJ6.483e-1433.33Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE1.444e-1334.19Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP32_ARATH1.444e-1333.54Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP11_MAIZE1.444e-1333.93Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ARATH1.444e-1335.67Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH2.463e-1333.33Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIPA_PHAVU4.202e-1331.06Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_H12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936566 ID=CK936566; Name=CK936566; organism=Citrus sinensis; type=EST; length=721bp
GGGGATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCT
TCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAA
AGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGA
TTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCA
CCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTC
GGCATTCGAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAC
TCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCAAAACGGAG
CGCCAGGGACTCTCATGTTCC
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