CX675154

Overview
NameCX675154
Unique NameCX675154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38
Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = -3
Query:  356 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 883
            A+T LDENRAK QLA KAGV    VSN+ IWGNHS TQ PDF NA++NG P  +VI DH WL+  F  T+QKRG  +I   G SSAAS + ++VD + ++VTPT  GDWFS+  ++NG  YG+ + ++F  P +S G    E+V  +  + + +++   T  EL  E+  V  + G
Sbjct:  154 AMTGLDENRAKTQLAQKAGVLVKDVSNVAIWGNHSATQYPDFFNAKVNGKPATDVISDHDWLKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGE-YGVDKGLIFGYPLKSDGK-KVEIVTGLEINAFGKEKFDITHNELKEERNEVKDMLG 327          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38
Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = -3
Query:  356 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 883
            A+T LDENRAK QLA KAGV    VSN+ IWGNHS TQ PDF NA++NG P  +VI DH WL+  F  T+QKRG  +I   G SSAAS + ++VD + ++VTPT  GDWFS+  ++NG  YG+ + ++F  P +S G    E+V  +  + + +++   T  EL  E+  V  + G
Sbjct:  154 AMTGLDENRAKTQLAQKAGVLVKDVSNVAIWGNHSATQYPDFFNAKVNGKPATDVISDHDWLKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGE-YGVDKGLIFGYPLKSDGK-KVEIVTGLEINAFGKEKFDITHNELKEERNEVKDMLG 327          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.999e-38
Identity = 78/175 (44.57%), Postives = 112/175 (64.00%), Query Frame = -3
Query:  362 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 886
            HA+ RLD+NR    LA +A V  ++VS + IWGNHS  QVPDF  ARI+G P  EVI D  WLE     ++Q RG  +I+  G+SSAAS S ++ +A +S+  P  + +WFSSGV ++ NPYGI ED++F  PCR    GDYE++  + ++ ++R +I  +  E+  EK  V+ L
Sbjct:  155 HAMLRLDQNRMHSMLAHRAEVPLEEVSRVVIWGNHSAKQVPDFTQARISGKPAAEVIGDRDWLENILVHSVQNRGSAVIEARGKSSAASASRALAEAARSIFCPKSD-EWFSSGVCSDHNPYGIPEDLIFGFPCRMLPSGDYEIIPGLPWEPFIRNKIQISLDEIAQEKASVSSL 328          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 77/173 (44.51%), Postives = 111/173 (64.16%), Query Frame = -3
Query:  368 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVA 886
            HA+ RLD+NR    LA +A V    VS + +WGNHS  QVPDF  A I+G P+ E I D  WLE     ++Q RG  +I+  G+SSAAS + ++ +A +S+  P  EG+WFSSGV ++ NPYG+ EDI+F  PCR  G G+YE+V  + +D ++R ++  +  E+L EK  V+
Sbjct:  154 HAMLRLDQNRMHSMLAHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIHGRPIVETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARSIYQP-KEGEWFSSGVCSDNNPYGLPEDIIFGFPCRMLGTGEYEIVPGLPWDAFIRGKMQISLDEILQEKASVS 325          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.660e-37
Identity = 78/175 (44.57%), Postives = 114/175 (65.14%), Query Frame = -3
Query:  362 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 886
            H++ RLD+NR    LA +A V  D+VS++ IWGNHS  QVPDF  A I+G P  EVI D  WLE     +IQ RG  +I+  G+SSAAS + ++ +A +S+  P  +G+WFS+GV ++ NPYGI ED++F  PCR    GDYE+V  +++D +++ +I  +  E+  EK  V+ L
Sbjct:  157 HSMLRLDQNRMHTMLAHRAEVPLDEVSHVVIWGNHSAKQVPDFTQALISGKPAVEVIGDRDWLENIMLPSIQNRGSAVIEARGKSSAASAARALAEAARSIFLP-KDGEWFSTGVCSDYNPYGIPEDLIFGFPCRMLPSGDYEIVPGLLWDTFIKNKIQISLDEISQEKANVSLL 330          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_LEPBL (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mdh PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.537e-37
Identity = 75/168 (44.64%), Postives = 118/168 (70.24%), Query Frame = -3
Query:  380 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 883
            A+T+LDENRAK QLA KAGV   +V+++ IWGNHS+TQ PDF NA+I+G PV +VI DH+WL+  F + +Q+RG  +IK  G SSAAS +  +VD +++++TPT  GD FS+ + ++G+ YG  + ++F  P +S G     +V+ + F+D+ +++   T  EL++E+
Sbjct:  154 AMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSSTQYPDFYNAKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGS-YGTEKGLIFGFPLKSDGK-KVGIVQGLPFNDFAKEKFKTTHDELISER 319          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_LEPBJ (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mdh PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.537e-37
Identity = 75/168 (44.64%), Postives = 118/168 (70.24%), Query Frame = -3
Query:  380 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 883
            A+T+LDENRAK QLA KAGV   +V+++ IWGNHS+TQ PDF NA+I+G PV +VI DH+WL+  F + +Q+RG  +IK  G SSAAS +  +VD +++++TPT  GD FS+ + ++G+ YG  + ++F  P +S G     +V+ + F+D+ +++   T  EL++E+
Sbjct:  154 AMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSSTQYPDFYNAKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGS-YGTEKGLIFGFPLKSDGK-KVGIVQGLPFNDFAKEKFKTTHDELISER 319          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 75/174 (43.10%), Postives = 118/174 (67.82%), Query Frame = -3
Query:  362 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 883
            A+T+LDENRAK QLA KAGV   +V+++ IWGNHS TQ PDF N +I+G PV +VI DH+WL+  F + +Q+RG  +IK  G SSAAS +  +VD ++ ++TPT  GD FS+ V ++G+ YG  + ++F  P +S G    E+++ +  +D+ +++   T +EL++E+  V  +
Sbjct:  154 AMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSATQYPDFYNTKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGS-YGAEKGLIFGFPLKSDGK-KVEIIQGISLNDFAKEKFKITHEELVSERNEVKEM 325          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 75/174 (43.10%), Postives = 118/174 (67.82%), Query Frame = -3
Query:  362 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 883
            A+T+LDENRAK QLA KAGV   +V+++ IWGNHS TQ PDF N +I+G PV +VI DH+WL+  F + +Q+RG  +IK  G SSAAS +  +VD ++ ++TPT  GD FS+ V ++G+ YG  + ++F  P +S G    E+++ +  +D+ +++   T +EL++E+  V  +
Sbjct:  154 AMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSATQYPDFYNTKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGS-YGAEKGLIFGFPLKSDGK-KVEIIQGISLNDFAKEKFKITHEELVSERNEVKEM 325          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_CHLFF (Malate dehydrogenase OS=Chlamydophila felis (strain Fe/C-56) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 76/175 (43.43%), Postives = 113/175 (64.57%), Query Frame = -3
Query:  362 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 886
            H++ RLD+NR +  LA +A V  D+V+N+ IWGNHS  QVPDF  + I+G P  EVI D  WLE     +IQ RG  +I+  G+SSA S + ++ +A +S+  P  EG+WFS+GV ++ NPYGI ED++F  PCR    GDYE++  + +D +++ +I  +  E+  EK  V+ L
Sbjct:  155 HSMLRLDQNRMQAMLAHRAQVPLDEVTNVVIWGNHSAKQVPDFTQSLISGKPAVEVISDRDWLENIMLPSIQNRGSAVIEARGKSSAGSAARALAEAARSIFVP-KEGEWFSTGVCSDYNPYGIPEDLIFGFPCRMLPSGDYEIIPGLSWDVFIKNKIQISLDEISQEKANVSLL 328          
The following BLAST results are available for this feature:
BLAST of CX675154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_LEPBP2.406e-3846.02Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_LEPBA2.406e-3846.02Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_CHLPN6.999e-3844.57Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDH_CHLMU9.141e-3844.51Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLAB2.660e-3744.57Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_LEPBL4.537e-3744.64Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPBJ4.537e-3744.64Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPIN5.925e-3743.10Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC5.925e-3743.10Malate dehydrogenase OS=Leptospira interrogans ser... [more]
MDH_CHLFF5.925e-3743.43Malate dehydrogenase OS=Chlamydophila felis (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B12-C24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675154 ID=CX675154; Name=CX675154; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTTTTTTCTGTGAGGTACATACTGTGATTATACATAAGGACAAA
TAATACAGAATGTAAACGTTCTTATGTGGTGTGGTATATCAGTGTCGAGT
ATTCACACATAAGGTAACCACGGCAAAAGCCAAGCCAAGCCAACTTGACT
GGACACTTCCAATCTCAAATTTCATTAAATGGTTTAATACTGGCACGTTA
TCCTGCACACTCGTAATAAATAAATAGTTCATATTCTGCCTTCTCACTCT
ACAGCTTATTGCAGTAGCAGTCATGATTTCCTAGAGCCCTAACCACGTTT
ACATTTCTCCGGGAAGCATAGTGTCCTCTGGTAGATCACAAAAAGCAATG
CCCTCTCCTGTAAGATGGGCCACACATTTCTTCTCAGCTAGCAACTCTTG
TTCGGTCTTCGCTATCCGCTTGCGAAGGTAGTCATCAAATATTACATCCT
TGACAAGTTCATAATCACCATCTCCTTTTGATCTGCATGGCATGCTGAAG
ACAATATCCTCTGCTATGCCGTAAGGATTTCCATTTGTATAAACGCCAGA
TGAAAACCAATCACCCTCGGGTGTGGGAGTTACTAGAGACTTCATGGCAT
CAACAATTGACACAGAAGTGGATGCAGCTGAAGATCTTCCCCATTTCTTA
ATCAGTAGTCCACCTCTCTTCTGGATTGTTTCAGTGAACCCCTCTTCCAG
CCATTTGTGGTCCTTGATAACCTCTTTCACAGGTAAGCCATTGATCCTAG
CATTTAGGAAGTCCGGAACCTGAGTGGTTGAGTGGTTTCCCCAGATGGTC
ATATTTGACACTTTGTCGTAGAATACACCTGCTTTAAGGGCGAGCTGGCA
TTTTGCTCTATTTTCATCTAATCTAGTCAAGGCATGAA
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