CX675148

Overview
NameCX675148
Unique NameCX675148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURXL (Nod factor export ATP-binding protein I OS=Burkholderia xenovorans (strain LB400) GN=nodI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  115 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            LSGG KR+L++A A++ DP ++I+DEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G+P  L
Sbjct:  137 LSGGMKRRLTLARALVNDPDVLIMDEPTTGLDPQARHLIWERLRSLLAR-GKT-ILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPSAL 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHISN (Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain NGR234) GN=nodI PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++ R  G+    +++ +   L    L   A  P   LSGG +R+L++A A+I DP ++ILDEP+TG+DP A+  +WE +  L    GKT ++LTTH M EA  LC R+ ++  G+    G P  L
Sbjct:  138 LLVFGRYFGLHTRELEEAIPPLLDFARLESKADVPVAQLSGGMQRRLTLACALINDPQLLILDEPTTGLDPHARHLIWERLRSL-LALGKT-ILLTTHFMEEADRLCDRLCVIEHGRKIVEGRPHAL 262          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BRASS (Nod factor export ATP-binding protein I OS=Bradyrhizobium sp. (strain SNU001) GN=nodI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.074e-14
Identity = 53/158 (33.54%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN-KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ 471
            L ++ R  G++  R  + V+  L+EF  L+       +L GG  KR+L++A A+I DP ++++DEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC  + ++  G     G P  L         +     E+   DL+ L ++I+
Sbjct:  100 LLVFGRYFGMSA-RTIEAVVPSLLEFARLESKADVRVSLLGGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLAR-GKT-ILLTTHFMEEAERLCDPLCVLESGCKIAEGEPDALIDE-----HIGCNVIEIYGGDLDQLRELIR 249          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NOSF_PSEST (Copper transport ATP-binding protein nosF OS=Pseudomonas stutzeri GN=nosF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 48/148 (32.43%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 444
            L  +AR+KG A  ++D++    L +  L   A +   T S G +++L +A A++G+P +++LDEP+ G+DPIA + ++ +I RL  RQ  T++IL +H +   +A   R  I+  G L+ +GS   L+   G  L + ++ + +S  D
Sbjct:   95 LRHFARLKGAALTQVDEL----LEQVGLAHAADRRVKTYSKGMRQRLGLAQALLGEPRLLLLDEPTVGLDPIATQDLYLLIDRL--RQRGTSIILCSHVLPGVEAHINRAAILAKGCLQAVGSLSQLRAEAG--LPVRIRASGISERD 234          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: CBIO2_STAS1 (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.022e-13
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   67 LVEFDLLKHAKKPS-FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL--KTRFGNFLELEVKPTEVSSVDLEDLCQ 462
            L++F   +   + S F +SGG  RK+++   +  DP IVILDEP+ G+DP ++  + ++I +L   Q KT +IL TH MN+       I IM  GQL    SP+ L   T + N L L+V        D+ED  Q
Sbjct:  129 LIDFGFSRDILQQSPFQMSGGQMRKIAITSILAMDPDIVILDEPTAGLDPKSRDQIMKMIKKLQVEQNKT-IILVTHEMNDVAKYVDEIKIMKQGQLVEECSPRKLFSDTNYVNQLHLDVPDVVKLQRDIEDKYQ 262          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: YFIL_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiL OS=Bacillus subtilis GN=yfiL PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13
Identity = 46/131 (35.11%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            ++Y    G A+ R  +V    L    L + AK    T SGG KR++++  A++  P ++I+DEP+ G+DP ++  + E + +L+   G T VI T+H M E + LC RIGI+  G++  IG+   L +R G
Sbjct:  100 KMYGLTHGEAKKRAAEV----LEYVGLTERAKDKIETFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLN-ETGMT-VIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTDLCSRLG 224          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: YADG_ECOLI (Uncharacterized ABC transporter ATP-binding protein yadG OS=Escherichia coli (strain K12) GN=yadG PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   67 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 354
            L + DL     + +  LSGG KR+L +A A++ +P ++ILDEP+ G+D   +R MW  +  L+ +   T +ILTTH + EA+ LC  IGI+  G+L
Sbjct:  121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK--GTTIILTTHYLEEAEMLCRNIGIIQHGEL 214          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: Y1589_THETN (Putative ABC transporter ATP-binding protein TTE1589 OS=Thermoanaerobacter tengcongensis GN=TTE1589 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   16 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 441
            R++G  E  + + V E L   D+    K+  F LS G +++++VA  +   P ++ILDEP+TG+D   ++ M E++ RL+   G T +I+ TH+M        ++ +M  G++   G  + +       LEL +KP  + S+
Sbjct:  410 RMRGCTEEEVKERVAEALKAVDMEGFEKEDPFALSKGERQRIAVASILAARPKVIILDEPTTGLDYKEQKRMMELVKRLN-ESGHT-IIMITHTMWIVAEYAHKVAVMRDGKIEMYGKVRDVFKEEERLLELSLKPPSIVSL 549          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: DRRA_STRPE (Daunorubicin resistance ATP-binding protein drrA OS=Streptomyces peucetius GN=drrA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 56/206 (27.18%), Postives = 99/206 (48.06%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG-NFLELEVKPTEVSSVDLEDLCQ----IIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEML 603
            L +  R++G +  R  +   E +  F L     +   T SGG +R+L +A +++  P ++ LDEP+TG+DP ++  +W+++  L      T V+LTT  ++EA  L  RI ++  G++   G+   LK+  G N L L +   + S  + E L      +   R  D P+   + +DD    +  +  +S  +      SL Q  L
Sbjct:  102 LVMMGRLQGYSWARARERAAELIDGFGLGDARDRLLKTYSGGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDIVRALV--DAGTTVLLTTQYLDEADQLADRIAVIDHGRVIAEGTTGELKSSLGSNVLRLRLHDAQ-SRAEAERLLSAELGVTIHRDSD-PTALSARIDDPRQGMRALAELSRTHLEVRSFSLGQSSL 303          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: YBHF_SHIFL (Uncharacterized ABC transporter ATP-binding protein ybhF OS=Shigella flexneri GN=ybhF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 42/133 (31.58%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 399
            L  ++ + G+     ++ +      F L   A   +  L  G K++L++A +++ +P I+ LDEP++G+DP+ +R  W  I+ +   +G T V++TTH M+EA+  C RIG++  G+L   G+P  LK +  N
Sbjct:  423 LRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSM-VEKGVT-VMVTTHFMDEAE-YCDRIGLVYRGKLIASGTPDDLKAQSAN 552          

HSP 2 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 1
Query:    1 LELYARIKGVA-EYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 429
            L LYA ++ V  E R       +L+EF  L     + +  LSGG K+KL +A  ++G+P +++LDEP  G+DPI++R +W+++  L+   G+  +IL + S  +    C  + +M  G+L   G P+ L         L   P E
Sbjct:  101 LNLYADLRSVTGEARKQ--TFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELA---GEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHE 240          
The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
NODI_BURXL6.285e-1546.07Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_RHISN1.072e-1437.80Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_BRASS4.074e-1433.54Nod factor export ATP-binding protein I OS=Bradyrh... [more]
NOSF_PSEST1.185e-1332.43Copper transport ATP-binding protein nosF OS=Pseud... [more]
CBIO2_STAS12.022e-1337.04Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
YFIL_BACSU2.641e-1335.11Uncharacterized ABC transporter ATP-binding protei... [more]
YADG_ECOLI1.712e-1240.63Uncharacterized ABC transporter ATP-binding protei... [more]
Y1589_THETN3.813e-1229.58Putative ABC transporter ATP-binding protein TTE15... [more]
DRRA_STRPE4.980e-1227.18Daunorubicin resistance ATP-binding protein drrA O... [more]
YBHF_SHIFL1.109e-1131.58Uncharacterized ABC transporter ATP-binding protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bp
CTTGAGCTTTATGCTAGGATAAAAGGAGTCGCAGAATACAGGATGGATGA
TGTTGTTATGGAAAAGTTAGTTGAGTTTGACTTGTTGAAGCATGCCAAAA
AACCATCATTTACCCTGAGCGGGGGTAACAAGCGTAAATTATCGGTTGCA
ATTGCAATGATTGGAGATCCTCCAATTGTTATTCTTGATGAGCCATCCAC
AGGCATGGATCCAATTGCTAAACGATTCATGTGGGAAGTGATATCTCGTT
TATCAACTAGACAAGGGAAGACAGCAGTTATCCTTACAACCCACAGCATG
AATGAAGCTCAAGCATTATGCACCAGAATTGGAATAATGGTTGGCGGCCA
GCTTAGATGTATTGGAAGTCCCCAGCATTTAAAAACACGGTTTGGGAATT
TTCTTGAGCTAGAGGTTAAACCTACTGAGGTTAGCTCGGTAGATTTGGAA
GACCTTTGCCAGATTATTCAAGAAAGAGTATTTGACATTCCTTCTCAGCG
AAGGAGCTTGTTAGATGACCTTGAAGTTTGCATTGGTGGTATTGACTCCA
TTTCATCAGAAAATGCAACGGCGGCAGAAATTAGCTTGTCACAGGAAATG
TTACTTATAGTTGGGTGCTGGCTTGGCAATGAAGAAAGAATAAAAACACT
TATAAGTTCCTCCTCTTCTCCTGATAGAATATTTGGGGAACAATTGTCTG
AGCAGTTGGTTCGAGATGGAGGTATACAATTGCCGATATTCTCCGA
back to top