CK936495

Overview
NameCK936495
Unique NameCK936495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936495_ssr33 microsatellite CK936495_ssr33:33..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6192 contig Csv1_Contig6192:45..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP4_KLULA (Actin-related protein 4 OS=Kluyveromyces lactis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 49/176 (27.84%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTER 705
            +G D P+++ PS  G     G       K  +        R  + +K  +E+  + +WD  ++ W +    +L+    +  PVLLTE   N +A+R+K  +I+ E+    A Y+A  +    +A GR T +V+D G  VS   P+ +G  L  +  R  +AG+ L   + K L  R
Sbjct:   31 SGTDCPQSIMPSSYGNVETDG-----DTKRIFNEQPLLFPRAGMEIKPIVENSTIVDWDRAQEQWEYALNTDLKFESNKGTPVLLTEPIWNSEASRKKSLEILLESMEFEACYLAANSSAVSFAMGRPTCLVVDIGHDVSTVSPVIDGMTLSKSSTRNYVAGKYLNHLIAKNLKPR 201          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.515e-12
Identity = 60/215 (27.91%), Postives = 98/215 (45.58%), Query Frame = 1
Query:  172 GWVAGD--DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNEL---RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYAS----GRTTGIVLDS--------GDGVSHTV--PIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            G+V+ D  D    + P+ + R RH  +         YVG E +  +    L  + P+E G + NW+  ++IW   F+++    +  P +  ++LTE P +  + +    QI+FE +   + Y  +  V   Y       RT    +DS          G SHT   PI +G  L  AI RLD+ G+ +T+ L ++L+ R   F    E  IV +M
Sbjct:   34 GFVSDDKSDGKPRIIPNCLARDRHRKI---------YVGSELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSVR--HFDMRNEPYIVNEM 237          

HSP 2 Score: 20.4014 bits (41), Expect = 1.515e-12
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 2
Query:  140 LVCDNGTGMVKAG 178
            LV DNG   +KAG
Sbjct:   22 LVLDNGADTIKAG 34          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP6_CRYNE (Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 55/190 (28.95%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  178 VAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKY--PIEHGIVSNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLF----LYASGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYS 714
            ++G D    V P+ + R R         +K  YVGDE  + + +  + Y  P E G++ NWD    IW   F  + L + P E  +L+TE   N     E   Q++FE F   + +    A L     LY S +       IV+D G   +H VPI +G  +   + R+D+ G+ LT++L  +++ R ++
Sbjct:   20 ISGVDWEPRVLPNSIARSRT--------EKRVYVGDEIDNCKDLSGIVYRRPFEKGMLVNWDAERIIWDRLFSPSVLNINPTETSLLVTEPYFNLPNIAETYDQMIFEEFEFQSYFRCAPAALIPYGGLYESDQGIPPQCTIVIDMGYSYTHVVPIRDGQIVWEHVKRIDVGGKLLTNHLKHLISFRQWN 201          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 49/194 (25.26%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELRVAP-------------------------------EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 663
            AG+D P+++ P+  G+    G      Q+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L  A                                 + P+L++E   NP   REK  +I  E +  PA Y+A   VL  +A+G+ + +V+D G       P+++G  L   +    L G
Sbjct:   34 AGEDTPKSLVPTYYGKYSFEG------QEKLIFGDDVFVTPRPSLSVGNPMGRDGVVEDWDMAEKLWEYSFTSRLTGAKPSNPLHNGLNDLVEGELPTEMEGVETNEKPLADSPLLMSECSWNPTKAREKTIEIAMEKWGTPAFYLARNGVLASFAAGKASALVVDIGASNISVTPVHDGMVLKRGVQHSPLGG 221          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 44/183 (24.04%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  172 GWVAGDDAPRAVFPSIVGRPRHTGVMVGMGQ---KDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL-FLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKIL 696
            GW AG D P  VF +++ +PR         +       +G++  +   +   L+   +  +V++    E+I+ + F   L +  +    HPVLLTE   NP  +R  M+++MFE +  P +  A+  +L +    G+ +G+++  G   +H +P+  G  +   + R++L G ++ + + ++L
Sbjct:   42 GW-AGKDVPSLVFKNVLAKPRKDRSKKDTSEVVVPTVQIGNDITNIEAVRFQLRTQFDRNVVTHLHVQEQIFDYLF-GRLGINADGCVPHPVLLTECVANPNYSRMLMSELMFECYGIPGIVYAVDGLLSYRMNGGQDSGLIVSCGYQATHVIPVLNGRMVEDKVRRINLGGFNMINFMFRLL 222          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 52/210 (24.76%), Postives = 90/210 (42.86%), Query Frame = 1
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK-YPIEHGIVSNWDDMEKIWHHTFYNELRVA---------------PE-----------------------EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKI 693
            AG+D P+++ PS  G       + G   +D + GDE    R    ++ Y  +  +V +WD   +IW +   N L+                 PE                       E+P+L+TEAP N    REK  +I+ E +  PA +++   VL  +A+G+ T +V+D G   +    I++G  L  +I +  + G  L+  +  +
Sbjct:   38 AGEDVPKSILPSFYGH------VTGDNSRDLF-GDECLIPRENYEVRNYMNKDSVVEDWDVAARIWENMLVNRLQPERQTPPSKNGLNDDPRPEGQDGEGDVAMDDAEAESMEKPLGENPLLVTEAPWNTPKAREKAIEIIMENWGCPAFWMSRTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVLKRSIQKSPVGGIWLSSQIRSL 240          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.655e-11
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  172 GWVAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKIL 696
            GW A D +    P   F S+  R R  G   G G  +  VG++  S   +   L+ P +  +    +  E ++ H F   L VA +   +HP++LTEA  NP  +R+ M++++FE +  P +   + ++   Y + R     +G+V+ SG   +H +P+ EG        R++L G      L ++L
Sbjct:   46 GWAAADPSVPAEPLLRFRSLAARSR--GARGGAGA-ETQVGNDLGSPEPLRWLLRSPFDRNVPVQLELQELLFDHVF-QRLGVASQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYQVPKVSYGVDSLYSFYHNRRQNWPCSGLVISSGYQCTHILPVLEGRLDAKNCKRINLGGCQAAVYLQRLL 228          

HSP 2 Score: 20.7866 bits (42), Expect = 2.655e-11
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  137 PLVCDNGTGMVKAG 178
            PLV DNG+   +AG
Sbjct:   33 PLVIDNGSFQTRAG 46          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP4_DEBHA (Actin-related protein 4 OS=Debaryomyces hansenii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 39/181 (21.55%), Postives = 81/181 (44.75%), Query Frame = 1
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMV------GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTER 705
            AGDD P+ + PS    P    + +      G  +     G+     R    +   ++  ++ +W+   + +H+ F + L +  +E P+L+TE        R+ + +  +E F+ PA+++A       +  GR   +V+D G       P+ +G +L    ++ +  G+ L D +  +LT +
Sbjct:   33 AGDDFPKIITPSSYASPNEDAMELDNKKKNGKSKSSKIFGESINIPRSNHNVSPILKDSVIIDWEAAIEQYHYYFDDVLTLNYKEQPILITEPVWCTPQYRQTLLETFYENFDFPALFLAKSPTCISFQQGRPNCLVVDIGHDSVSVTPVIDGISLLKNSMKTNYGGQYLNDQIEDMLTHK 213          
The following BLAST results are available for this feature:
BLAST of CK936495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
ARP4_KLULA1.340e-1227.84Actin-related protein 4 OS=Kluyveromyces lactis GN... [more]
ARP6_NEUCR1.515e-1227.91Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP6_CRYNE2.985e-1228.95Actin-like protein ARP6 OS=Cryptococcus neoformans... [more]
ARP4_EMENI6.650e-1225.26Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP5_AEDAE8.685e-1224.04Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ARP4_GIBZE1.134e-1124.76Actin-related protein 4 OS=Gibberella zeae GN=ARP4... [more]
ARP5_CHICK2.655e-1127.27Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP4_DEBHA9.603e-1121.55Actin-related protein 4 OS=Debaryomyces hansenii G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936495 ID=CK936495; Name=CK936495; organism=Citrus sinensis; type=EST; length=754bp
GCGGGGAATCAANNNACAACAAAAACCAAACTAAAACAAAACAAAACAAG
GAGGCGTCCATTTTGTGCGCCTCGTAATTCGCTCGTTCTCATCTCATAAC
CGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGTTTGTGA
TAATGGAACAGGAATGGTTAAGGCTGGGTTGCCGGAGATGATGCTCCACG
GGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGTGTGATGG
TTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCGAAG
AGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTGTGAGCAA
CTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTTC
GTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCCTCTCAAT
CCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGACCTTTAA
TGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTTCTTGTATGCGA
GTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCAT
ACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATACTTCGTCT
TGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAATCCTCACTG
AGCGTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTGTCAGGGAC
ATGA
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