CK936495

Overview
NameCK936495
Unique NameCK936495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936495_ssr33 microsatellite CK936495_ssr33:33..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6192 contig Csv1_Contig6192:45..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 2.939e-105
Identity = 179/201 (89.05%), Postives = 188/201 (93.53%), Query Frame = 1 
Query:  163 NG*GWV----AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            NG G V    AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ+KRGILTLKYPIEHGIV+NWDDME  WHHTFYNELRV+PE+HPVLLTEAPLNPKANREKMTQIMFETF  PAMYVAI+AVL LYASGRTTGIV+DSGDGVSHTVPIYEGY LPHAILRLDLAGRDLTD+LMKILTERGYS TT+AEREIVRD+
Sbjct:   13 NGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQAKRGILTLKYPIEHGIVNNWDDMEN-WHHTFYNELRVSPEDHPVLLTEAPLNPKANREKMTQIMFETFECPAMYVAIEAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYTLPHAILRLDLAGRDLTDHLMKILTERGYSLTTSAEREIVRDI 212

HSP 2 Score: 42.3578 bits (98), Expect = 2.939e-105
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 2 
Query:  113 MADGEDIQPLVCDNGTGMVKAG 178
            MAD EDIQP+VCDNGTGMVKAG
Sbjct:    1 MAD-EDIQPIVCDNGTGMVKAG 21
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT8_SOLTU (Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.004e-105
Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+
Sbjct:    4 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDV 194
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.004e-105
Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+
Sbjct:    4 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDV 194
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT10_SOLTU (Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C PE=3 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.004e-105
Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+
Sbjct:    4 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDV 194
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT_MAYDE (Actin OS=Mayetiola destructor PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 3.835e-105
Identity = 183/191 (95.81%), Postives = 188/191 (98.43%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL LYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+
Sbjct:   23 AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

HSP 2 Score: 26.1794 bits (56), Expect = 3.835e-105
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  125 EDIQPLVCDNGTGMVKAG 178
            +++  LV DNG+GM KAG
Sbjct:    4 DEVAALVVDNGSGMCKAG 21
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 3.835e-105
Identity = 184/191 (96.34%), Postives = 187/191 (97.91%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+
Sbjct:   23 AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

HSP 2 Score: 26.1794 bits (56), Expect = 3.835e-105
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  125 EDIQPLVCDNGTGMVKAG 178
            +++  LV DNG+GM KAG
Sbjct:    4 DEVAALVVDNGSGMCKAG 21
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 3.835e-105
Identity = 184/191 (96.34%), Postives = 187/191 (97.91%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+
Sbjct:   23 AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

HSP 2 Score: 26.1794 bits (56), Expect = 3.835e-105
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  125 EDIQPLVCDNGTGMVKAG 178
            +++  LV DNG+GM KAG
Sbjct:    4 DEVAALVVDNGSGMCKAG 21
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT3_DROME (Actin-57B OS=Drosophila melanogaster GN=Act57B PE=3 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 3.835e-105
Identity = 183/191 (95.81%), Postives = 188/191 (98.43%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+
Sbjct:   23 AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

HSP 2 Score: 26.1794 bits (56), Expect = 3.835e-105
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  125 EDIQPLVCDNGTGMVKAG 178
            +++  LV DNG+GM KAG
Sbjct:    4 DEVAALVVDNGSGMCKAG 21
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT2_BACDO (Actin-2, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 3.835e-105
Identity = 183/191 (95.81%), Postives = 188/191 (98.43%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVL LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+
Sbjct:   23 AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

HSP 2 Score: 26.1794 bits (56), Expect = 3.835e-105
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  125 EDIQPLVCDNGTGMVKAG 178
            +++  LV DNG+GM KAG
Sbjct:    4 DEVAALVVDNGSGMCKAG 21
[Close]
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.835e-105
Identity = 183/191 (95.81%), Postives = 187/191 (97.91%), Query Frame = 1 
Query:  181 AGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDM 753
            AGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVL LYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+
Sbjct:   23 AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

HSP 2 Score: 27.335 bits (59), Expect = 3.835e-105
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  125 EDIQPLVCDNGTGMVKAG 178
            E++  LV DNG+GM KAG
Sbjct:    4 EEVAALVVDNGSGMCKAG 21
The following BLAST results are available for this feature:
BLAST of CK936495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
ACT1_MAIZE2.939e-10589.05Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
ACT8_SOLTU3.004e-10597.91Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT5_SOLTU3.004e-10597.91Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT10_SOLTU3.004e-10597.91Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C... [more]
ACT_MAYDE3.835e-10595.81Actin OS=Mayetiola destructor PE=2 SV=1[more]
ACT4_ARTSX3.835e-10596.34Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_LIMPO3.835e-10596.34Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT3_DROME3.835e-10595.81Actin-57B OS=Drosophila melanogaster GN=Act57B PE=... [more]
ACT2_BACDO3.835e-10595.81Actin-2, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT2_ONCVO3.835e-10595.81Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936495 ID=CK936495; Name=CK936495; organism=Citrus sinensis; type=EST; length=754bp
GCGGGGAATCAANNNACAACAAAAACCAAACTAAAACAAAACAAAACAAG
GAGGCGTCCATTTTGTGCGCCTCGTAATTCGCTCGTTCTCATCTCATAAC
CGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGTTTGTGA
TAATGGAACAGGAATGGTTAAGGCTGGGTTGCCGGAGATGATGCTCCACG
GGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGTGTGATGG
TTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCGAAG
AGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTGTGAGCAA
CTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTTC
GTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCCTCTCAAT
CCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGACCTTTAA
TGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTTCTTGTATGCGA
GTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCAT
ACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATACTTCGTCT
TGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAATCCTCACTG
AGCGTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTGTCAGGGAC
ATGA
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