CK936491

Overview
NameCK936491
Unique NameCK936491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2911 contig Csv1_Contig2911:1..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  537 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNFP 713
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF               + +GSKA LNFP
Sbjct:   89 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  540 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNFP 713
            +RGVR+RPWGK+AAEIRDP+RR VRVWLGTF               QLRG  A LNFP
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  540 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGS-KAILNFPLE 719
            YRGVR+RPWGK+AAEIRD TR GVRVWLGTF               ++RG+ KA  NF LE
Sbjct:  110 YRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  540 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNF---PLEAGKCDSNAAVARECDSSAE 776
            +RG+R+RPWGK+AAEIRDP R+GVRVWLGTF               ++RG KA +NF   P  A K  + +  A+   SS E
Sbjct:  120 FRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVE 200          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  537 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNFP 713
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF               + +G+KA LNFP
Sbjct:   38 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 3
Query:  540 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNFPLEAG 725
            YRGVR+RPWGK+AAEIRDP  +  RVWLGTF               + RGSKA LNFP   G
Sbjct:   61 YRGVRQRPWGKWAAEIRDP-HKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  540 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNFPL 716
            YRGVRRRPWG+YAAEIRDP ++  RVWLG+F               + RGSKA  NFPL
Sbjct:   53 YRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
BLAST of CK936491 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  537 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFXXXXXXXXXXXXXXFQLRGSKAILNFP 713
            +YRGVR+RPWGK+AAEIRDP  +  RVWLGTF              F+ RG KA LNFP
Sbjct:   69 NYRGVRQRPWGKWAAEIRDP-NKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
The following BLAST results are available for this feature:
BLAST of CK936491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF114_ARATH2.884e-1155.93Ethylene-responsive transcription factor ERF114 OS... [more]
CRF1_ARATH2.884e-1160.34Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF91_ARATH3.766e-1157.38Ethylene-responsive transcription factor ERF091 OS... [more]
ERF1_ORYSJ6.424e-1146.34Ethylene-responsive transcription factor 1 OS=Oryz... [more]
EF113_ARATH6.424e-1154.24Ethylene-responsive transcription factor ERF113 OS... [more]
RAP26_ARATH8.390e-1154.84Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF77_ARATH8.390e-1155.93Ethylene-responsive transcription factor 10 OS=Ara... [more]
EF112_ARATH8.390e-1155.93Ethylene-responsive transcription factor ERF112 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_G05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936491 ID=CK936491; Name=CK936491; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGCANNNTCAAAACTCTTTAATATTTNNNAGATTCAAAAACTCT
ATAAGGGACACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATC
AGCGCTCGAGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTG
CGGGATTTAGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACG
TCCAGCTCTGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTT
CGACTATGAATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCA
CTAATACTTGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGA
CCTCAAATCCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAA
GCCTAAAATATCACCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGC
TGAAAATCTCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGG
AAAAGCAAGGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGT
TCGACGGAGGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCC
GGAGAGGCGTACGTGTCTGGCTGGGGACATTTGACACGGCCACTGAAGCA
GCTAGGGCGTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAAAGCGAT
CCTCAACTTTCCTCTTGAAGCCGGCAAGTGCGACTCAAACGCTGCGGTGG
CTAGAGAGTGTGACTCGAGCGCCGAGGCTGGCGCTTGTGAAACGAAACGG
AAGAGGGACTGTGAGAGC
back to top