CK936488

Overview
NameCK936488
Unique NameCK936488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10142 contig Csv1_Contig10142:9..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.142e-56
Identity = 112/197 (56.85%), Postives = 135/197 (68.53%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            +P  LQD CVA N+  +GV+VNGKFCKDPK   A DF+ SGL  PGNT+   GV  T  +V+++PGLNTLG+   RID+AP G  PPH HPR SEIFLV++G L+VGFV+S++ N TL  KVL  GDVFVFP+GLI F  NIGKTNA    A  SQ PG + I + VFG+ P I+P  L KAF LD   VK  Q  F
Sbjct:   26 EPSPLQDYCVATNET-NGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAVF 221          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.205e-55
Identity = 111/197 (56.35%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  LQD CVA N+  +GV+VNG+FCKDPK     DF+ SGL  PGNT    G   T  +VE++PGLNTLG+   R D+AP G  PPH HPR S+IFLV++G L+VGFV+S++ N TL  KVL  GDVFVFP+GLIHF  NIG+TNA    A  SQ PG + I D VFG+ P I+P  L KAF LD   VK LQ  F
Sbjct:   26 DPSPLQDYCVATNET-NGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAVF 221          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.580e-55
Identity = 120/200 (60.00%), Postives = 145/200 (72.50%), Query Frame = 1
Query:  127 DPGHLQDVCVA-INDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  LQD CVA +N P   V VNG  CK+P  A A+DFF +  L KP +T N++G + T  NV Q+PGLNTLGIS  R+D+AP G  PPH HPRA+EIF VLEGTLYVGFVTS+  +N L++KVLNKGDVFVFP+GLIHFQFN      A A  AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D KI+  LQ +F
Sbjct:   26 DPSPLQDFCVADLNSP---VRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNP-DNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQAQF 221          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.063e-54
Identity = 110/200 (55.00%), Postives = 129/200 (64.50%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGK-AFQLDPKIVKDLQNKF 717
            DP  LQD CV +N P DG+FVNG FCKDP     +DF F GL  P NT N LG   T      +PGLNTLGIS  R+D+AP+G  PPH HPRA+E+F+VLEGT YVGFVTS+  +  N L AKVLNKGDVFVFPQGLIHFQ NIG         L+SQ PG +TIA+ VFG      P+ L +  F L P I   + + F
Sbjct:   24 DPTQLQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFG------PEHLSQLMFLLRPSISMRIWSSF 217          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.924e-53
Identity = 115/202 (56.93%), Postives = 135/202 (66.83%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 729
            DP  LQD CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A  AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++   +  LQ +F   N
Sbjct:   25 DPSPLQDFCVA--DKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQFWENN 223          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 114/200 (57.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFF-SGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQL--NNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  LQD CVA  D    VFVNG  CK+PK   A DFF    LG PGNT N  G   T   V ++PGLNTLGIS  RID+AP GQ PPH HPRA+EI  VL+GTL VGFVTS+Q    N    K+L  GDVFVFPQGLIHFQ N G   A A  AL+SQ PG +TIA+ VFG+ P I  D L KAF +D   V  +Q KF
Sbjct:   29 DPSQLQDFCVA--DKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQAKF 226          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 114/202 (56.44%), Postives = 134/202 (66.34%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 729
            DP  LQD CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A  AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:   24 DPSPLQDFCVA--DKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 116/197 (58.88%), Postives = 140/197 (71.07%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 708
            +P  LQD CVA  D    V VNG  CK+P    A+DFF +  L KP +TA N++G + T  NV +IPGLNTLGIS  R+DYAP G  PPH HPRA+EIF VLEGTLYVGFVTS+  +N L +KVLNKGDVFVFP+GLIHFQFN+     A A  A++SQ PG +TIA+ VF +NP I+ D L KAFQ+D KI+  LQ
Sbjct:   25 EPSPLQDFCVA--DLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNP-DNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQ 218          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.629e-52
Identity = 114/202 (56.44%), Postives = 134/202 (66.34%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 729
            DP  LQD CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A  AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:   24 DPSPLQDFCVA--DMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.739e-52
Identity = 119/206 (57.77%), Postives = 136/206 (66.02%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFF-SGLGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 729
            DP  LQD CVA  D    V VNG  CKD K    +DFF  + L KP +T  ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+EI  V EGTLYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A  AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D K V  LQ +F   N
Sbjct:   24 DPSPLQDFCVA--DRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
The following BLAST results are available for this feature:
BLAST of CK936488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL15_ARATH4.142e-5656.85Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL14_ARATH1.205e-5556.35Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL82_ORYSJ4.580e-5560.00Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GLP1_MESCR5.063e-5455.00Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL87_ORYSJ1.924e-5356.93Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL41_ORYSJ1.629e-5257.00Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ2.127e-5256.44Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ2.778e-5258.88Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL810_ORYSJ3.629e-5256.44Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL121_ORYSJ4.739e-5257.77Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_G02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936488 ID=CK936488; Name=CK936488; organism=Citrus sinensis; type=EST; length=730bp
GGGGATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGACTT
AATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCTT
TGACTTCTTCTTTGGCCTCTGCCACCGACCCTGGCCATCTTCAAGATGTC
TGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGTT
CTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGGC
TAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACAGAT
GCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAGCATT
CCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACCCCC
GTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTT
GTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAATAA
GGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAACA
TTGGAAAAACAAATGCAGCTGCCTATCCTGCTCTAAACAGCCAATTCCCG
GGTGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATCAA
TCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAAAG
ATCTTCAAAATAAGTTCATTAATGGCAATT
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