CK936488

Overview
NameCK936488
Unique NameCK936488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.211e-39
Identity = 91/202 (45.05%), Postives = 123/202 (60.89%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGN--TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFING 726
            D   LQD CVA  D K  V VNG  CK P  A  ++F FS     G    AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +    N   +KV+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:   30 DADPLQDFCVADLDSK--VTVNGHACK-PASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 228          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.581e-39
Identity = 100/204 (49.02%), Postives = 123/204 (60.29%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKP------GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFI 720
            DP  LQD CVA  DP   V VNG  CKDP    A+DFFFSG+G+P      G TA+R     T  +V+ IPGLNTLG SA R+D AP G  PPH HPRASE  +VL G +Y GFVTS   ++ ++AKVL +GDVF  PQGL+HF  N G   AA Y +L+SQ PG V +AD +  A   +  D + K    D   V  ++  FI
Sbjct:   30 DPNPLQDFCVA--DPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGATASRR-YGFTARSVD-IPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTS-YPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRANFI 226          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.697e-39
Identity = 90/202 (44.55%), Postives = 122/202 (60.40%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGN--TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFING 726
            D   LQD CVA  D    V VNG  CK P  A  ++F FS     G    AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +    N   +KV+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:   28 DADPLQDFCVA--DLNSEVTVNGHACK-PASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 226          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.009e-39
Identity = 89/204 (43.63%), Postives = 120/204 (58.82%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVN-------GKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  +QD CVA+  P+ G           G  CK      ++DFFF+GL    +T NR G + T AN E  PGLNTLG+S  R+D AP G  P H HPRA+E+  V+ G +  GFV++        +KVL +G+ FV P+G+IHFQ+N+G   A    A NSQ PG V    T+FG++P I    L K+FQ+D KI+K L++KF
Sbjct:   26 DPEPVQDFCVAVV-PRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVST---AGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSKF 225          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.025e-38
Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFING 726
            DP  LQD CVA  D +  V +NG  CK    A  E  F S L   G+  AN  G + T  +V   PG+NTLG+S  RID+AP G  PPH+HPRA+E+ +VL G L VG + S    N   ++V+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:   28 DPDPLQDFCVADLDSE--VTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 226          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.525e-37
Identity = 84/201 (41.79%), Postives = 118/201 (58.71%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKF----CKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  +QD CVA+  P+ G   +  +    CK      ++DFFF+GL   G+T N  G      NVE  P LNTLG++  R+D AP G  P H HPRA+E+  V+ G + VGFV++        +KV+ +G+ F  P+GL+HFQ+N G  +A A    NSQ PG V  A  +FGA+P I    L K+FQ+D +I+K L++KF
Sbjct:   36 DPEPIQDFCVAV--PRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVST---AGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.601e-34
Identity = 82/197 (41.62%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            D   LQD+CVA  D +    V+G  CK      ++DFF   + +  +T+N  GV+ T A V   PGLNTLG+S  R D AP G  PPH HPRASE+ LVL G + VGF T+    N L +KV+ + ++FV P+GL HFQ N+G  NA+     +SQ PG VT    +F   P++  + L K F +    V  +++KF
Sbjct:   30 DSPPLQDICVA--DLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA---ANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAIKSKF 221          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 79/192 (41.15%), Postives = 110/192 (57.29%), Query Frame = 1
Query:  142 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            QD CVA  D +     +G  CK      +EDFF+SGL  P NT+N  G+    AN+   PGLNTLGIS + +  AP G   PH HP  +E  +V+EG++ VGF+T+   N TL +KV+  GD+FV P GLIH++ N+GKT       +    P EV +  T+    P+I  + L  AF+ D K +  L++KF
Sbjct:   41 QDFCVA--DLQATPTNSGYPCKSQ--VTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTT---NYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKF 225          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.171e-32
Identity = 83/200 (41.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:  127 DPGHLQDVCVA--INDP-KDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  +QD C+   +  P  D  F     CK+      EDF FSGL   GN     G        E  PGLNTLGIS  R D  P    PPH HPRA+E+  +++G +Y GFV S   NN + AKV+ +G++ V+P+GL+HFQ N+G   A     LNSQ PG   I   VFG+   IN + L KAF L  K +  L+ +F
Sbjct:   26 DPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTET-GFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDS---NNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAFGLSLKQIGTLKKRF 219          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.171e-32
Identity = 83/190 (43.68%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 708
            +QD CVA     DG    G  CK P +    DF +SGLG  GNT N      T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL+HFQ N G T A A+P+ +S  PG + I D     N  +  + + +   LD   +K L+
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPG-LQIVDFALFKN-DLATELIAQTTLLDAPQIKKLK 202          
The following BLAST results are available for this feature:
BLAST of CK936488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL36_ORYSJ1.211e-3945.05Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL51_ORYSJ1.581e-3949.02Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ2.697e-3944.55Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ6.009e-3943.63Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ1.025e-3845.27Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL37_ORYSJ2.525e-3741.79Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL12_ORYSJ7.601e-3441.62Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH6.435e-3341.15Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL32_ARATH4.171e-3241.50Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
AB19B_PRUPE4.171e-3243.68Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_G02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936488 ID=CK936488; Name=CK936488; organism=Citrus sinensis; type=EST; length=730bp
GGGGATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGACTT
AATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCTT
TGACTTCTTCTTTGGCCTCTGCCACCGACCCTGGCCATCTTCAAGATGTC
TGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGTT
CTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGGC
TAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACAGAT
GCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAGCATT
CCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACCCCC
GTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTT
GTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAATAA
GGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAACA
TTGGAAAAACAAATGCAGCTGCCTATCCTGCTCTAAACAGCCAATTCCCG
GGTGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATCAA
TCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAAAG
ATCTTCAAAATAAGTTCATTAATGGCAATT
back to top