CK936487

Overview
NameCK936487
Unique NameCK936487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1264 contig Csv1_Contig1264:224..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936487 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSI (Sucrose transport protein 2 OS=Oryza sativa subsp. indica GN=SUT2M PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 GPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 300
            G PP G+ + +L +FT+LG P AIT+S+P+AMA+        GQGL++G+LNLAIV+PQ++VSL SGP+D + GGGN PAF V A A+ + G+VA+  LP
Sbjct:  390 GVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGLGQGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAVAAAASFIGGLVAILGLP 489
[Close]
BLAST of CK936487 vs. ExPASy Swiss-Prot
Match: SUC3_ARATH (Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 49/97 (50.52%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:   22 KVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 312
            +  A+ +F +LG P AIT+SVPF++ +  +  S  GQGL++GVLNLAIV+PQM+VSL +GP+D + GGGN+PAF++ +VAA  +G++AL  LP+ ++
Sbjct:  488 RTAAVIVFALLGFPLAITYSVPFSVTAEVTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDQLFGGGNLPAFVLASVAAFAAGVIALQRLPTLSS 584
The following BLAST results are available for this feature:
BLAST of CK936487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SUT2_ORYSI8.000e-2553.00Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]
SUC3_ARATH1.277e-2250.52Sucrose transport protein SUC3 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_G01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936487 ID=CK936487; Name=CK936487; organism=Citrus sinensis; type=EST; length=707bp
GGGCCGCCGCCGGTTGGTGTGAAAGTTGGCGCTTTGGCTATCTTCACTGT
GTTGGGAATTCCTCAAGCTATTACTTTCAGCGTTCCGTTTGCTATGGCAT
CCATATTTTCTAGAACTTCTGCTGCTGGTCAAGGGCTTTCGTTGGGTGTT
TTGAATCTTGCAATAGTTGTTCCACAGATGCTGGTGTCTTTACTTAGCGG
ACCCTTTGATGCCGTTTGCGGAGGTGGCAACATGCCGGCCTTTATGGTCG
GCGCAGTTGCGGCTGCCTTAAGTGGTATCGTTGCACTCACCCTGCTCCCA
TCAACAACCGCGGATGTTCCCCCGCCGATAACTGAAGCCGGAACTGCAAC
CGCAAATCAAACTAATAAGCTCTAGCTAGTCTTAGTTTGTTGGAAGAAAA
GAAGGGACAGACTTTTACTTTTTTTTTAAGTCATCCGAAATGTGCCTAAC
CCCTGAGTGTCTTTGGGAAAATAATTCTGCTGGTAAGTAAATGAATGTGG
TGCATGGCTGCAAGGCTTGTGTGTGTATGGAGTTTAAATGTATGTTGTTA
CTTGTAAGTGAGTGAAATAATTGACAAGGTGTTTGTTCGTAATTGCTATA
TTTTCGATGGCTTCGTTTTAAAATCACTTCGGTATTTACTTTTATTAAAG
AAAAATTATCTCTGTGCTACTTTTATTTTATTATATATACATTTGACCAA
AAAAAAA
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