CK936486

Overview
NameCK936486
Unique NameCK936486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10160 contig Csv1_Contig10160:61..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936486 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 3 
Query:  150 WCVCKDGVGDPVLQKALDYACG-AGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 395
            WCV K+   D  LQ A+++ACG  GADC PI   GPC +P  V+   S+  N+Y+ + G+   +C+F+ +A + + +PS   C
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTC 123
[Close]
BLAST of CK936486 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 3 
Query:  138 STANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 395
            S+ +WC+      +  L+ ALD+ACG G  DC  I  + PC+ P+T+ +H S+  NSYFQ+      +C F G+      DPS   C
Sbjct:  365 SSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKC 451
The following BLAST results are available for this feature:
BLAST of CK936486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L1_ARATH5.931e-1438.55Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH1.908e-1236.78Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936486 ID=CK936486; Name=CK936486; organism=Citrus sinensis; type=EST; length=798bp
GGGGTGTGTGTTGTGACTAACTTTTCTCGGAGCCAAACAAGCATTTGTTN
NNATTATCTCCTCTCTAAGTTTCTTTTGCTCATTCAGTTATGGCTGTTTT
GGTGCTTTTAGCTCTCTTCCTTGGCTTCACTGGGCATTCAACTGCAAACT
GGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTACAAAAAGCTTTG
GACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTATCCATTCCAATGG
GCCTTGTTACAACCCCAACACTGTCAAAGCTCACTGCAGTTATGCTGTCA
ACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAGGCTCTTGTGATTTTTCC
GGAAGTGCAACCGTTGCCACTACCGATCCCAGCACTGCTGGCTGTTCTTA
TCCTTCAAGTGCCAGCACTTCAGGCACCACCACAACTTCCCCAACAACAC
CAGTCACAGGTACTCCAGGCACAACCACACCCACAACGACTCCGTCCACT
ACCACTCCAACGACTAACACACCAGGCAGCACCACTCCGTACACCACCTC
ACCATCAACTGGAACTGGAGTGTTGGGAGGAGTTGGTCCTGGTTTAGGCC
CTTCGGGATCTGGTATGCCCAACACAGACTATAGTCATGGTGGGATGAGA
CTGCAAAACTCTGCCTTGTCTTTTTTGGTCGTCCTCTTGTTCTCAGGCTC
GATGCTCTTGTGGGGTTGAAAGAAACAATCAACATGACATCTACTAGGAT
GGAGATGTGGTACTATAGTCGGTGTCCTTAATACTGGATCTCAATGTG
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