CK936485

Overview
NameCK936485
Unique NameCK936485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK936485 vs. ExPASy Swiss-Prot
Match: KCS21_ARATH (3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.882e-50
Identity = 99/245 (40.41%), Postives = 148/245 (60.41%), Query Frame = 1 
Query:    4 VVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLLFLMTLIGRKIFNPKWKPYIP----DFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCNKTIKTTTDNPWSDCIDRYP 726
            +VVSTE + P++Y G +R+M+L NCLFR GG+++           A  +LV VVR H G+DD+AY C  + ED++G  G  L+K L   A  AL  N+  + P VLP  E + + +    ++  + K +P       + K   +HFCIH GGRA+I+ + K+L L+   +E +RM LHRFGNTSS  LWY + Y+E K R+KKG+++  ++ G+GF+ N+ VW+  K +     N W D +DRYP
Sbjct:  195 LVVSTETMGPHWYCGKDRSMMLSNCLFRAGGSSVLLTNAARFKNQALMKLVTVVRAHVGSDDEAYSCCIQMEDRDGHPGFLLTKYLKKAAARALTKNLQVLLPRVLPVKELIRYAIVRALKRRTSAKREPASSGIGLNLKTGLQHFCIHPGGRAIIEGVGKSLGLTEFDIEPARMALHRFGNTSSGGLWYVLGYMEAKNRLKKGEKILMMSMGAGFESNNCVWEVLKDL--DDKNVWEDSVDRYP 437
The following BLAST results are available for this feature:
BLAST of CK936485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS21_ARATH7.882e-5040.413-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936485 ID=CK936485; Name=CK936485; organism=Citrus sinensis; type=EST; length=881bp
GGGGTCGTTGTGAGCACGGAGATCATTACACCGAACTACTACCAAGGGAA
TGAACGAGCCATGCTCCTTCCGAATTGCCTCTTCCGCATGGGTGGAGCCG
CGATCTTGTTATCGAACCGGAGGCGCAACCGTTCCCGAGCCAAGTACCGG
CTGGTTCACGTGGTTCGAACCCACAAAGGAGCTGACGACAAGGCTTATCG
CTGCGTGTTTGAAGAGGAAGACAAAGAGGGCAAAGTAGGGATTTCGCTGT
CTAAAGACCTCATGGCAATAGCTGGGGAAGCTCTCAAATCGAACATCACC
ACGATTGGTCCCCTGGTCCTTCCTGCTTCGGAGCAGTTGCTGTTTCTCAT
GACACTCATCGGTCGCAAAATCTTTAACCCGAAGTGGAAACCATACATTC
CGGATTTCAAGCAGGCGTTTGAGCACTTCTGTATACATGCGGGTGGAAGA
GCGGTGATTGATGAGTTGCAGAAGAACTTGCAGCTGTCAGCAGAGCACGT
GGAGGCCTCGAGGATGACACTGCATCGTTTTGGCAATACGTCGTCGTCGT
CGCTTTGGTACGAGATGAGCTATATCGAAGAAAAGGGGAGGATGAAGAAG
GGAGACAGAGTTTGGCAGATTGCGTTTGGCAGTGGGTTCAAGTGTAACAG
TGCGGTCTGGAAGTGTAACAAGACGATTAAAACGACGACGGATAACCCTT
GGTCCGATTGCATTGATCGTTACCCAGTTCATATTCCCGAAATTGTCAAG
CTCTAGAAAGCCCTTAATTAGCCTCCTCGGTTTCATTTGCTATGGGTTGC
TACAGTTATTAGGAATAATCTCTTGCCTCATAATATTTGATCTGGGATTT
GCATTTGCTGCTGCTGCTGCTGCTGCTGTGT
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