CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ALLPO (Cytochrome c OS=Allium porrum PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.948e-45
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FK KCAQCHTV KGAGHKQGPNLNGLFGRQSGT   YSYSAANK MAV+W++ TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:   18 FKLKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTAAGYSYSAANKNMAVVWZZBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_GOSBA (Cytochrome c OS=Gossypium barbadense PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.356e-44
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK MAV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ARUMA (Cytochrome c OS=Arum maculatum PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.356e-44
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK MAVIWEE TLY+YLLNP KYIPGTKMVFPGL KPQ+RADLIAYLKESTA
Sbjct:   18 FKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEESTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKESTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_TROMA (Cytochrome c OS=Tropaeolum majus PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.771e-44
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FK KCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV+W++ TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:   18 FKNKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVLWZZATLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_RICCO (Cytochrome c OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.313e-44
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK MAV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:   18 FKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZATA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_HELAN (Cytochrome c OS=Helianthus annuus GN=CYTC1 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 3.945e-44
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSA NK  AVIWEE TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK STA
Sbjct:   19 FKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAGNKNKAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKTSTA 112
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_ARATH (Probable cytochrome c At1g22840 OS=Arabidopsis thaliana GN=At1g22840 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.728e-44
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F+TKCAQCHTV  GAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV WEEK LY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:   19 FRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_FRIAG (Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 8.788e-44
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV W+E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+T+
Sbjct:   19 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVNWDENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATS 112
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SOLLC (Cytochrome c OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.148e-43
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHK+GPNLNGLFGRQSGTT  YSYSAANK MAV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVEKGAGHKEGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_BRANA4.660e-4591.49Cytochrome c OS=Brassica napus PE=1 SV=1[more]
CYC_ALLPO7.948e-4588.30Cytochrome c OS=Allium porrum PE=1 SV=1[more]
CYC_GOSBA1.356e-4490.43Cytochrome c OS=Gossypium barbadense PE=1 SV=1[more]
CYC_ARUMA1.356e-4490.43Cytochrome c OS=Arum maculatum PE=1 SV=1[more]
CYC_TROMA1.771e-4488.30Cytochrome c OS=Tropaeolum majus PE=1 SV=1[more]
CYC_RICCO2.313e-4489.36Cytochrome c OS=Ricinus communis PE=1 SV=1[more]
CYC_HELAN3.945e-4489.36Cytochrome c OS=Helianthus annuus GN=CYTC1 PE=1 SV... [more]
CYC2_ARATH6.728e-4489.36Probable cytochrome c At1g22840 OS=Arabidopsis tha... [more]
CYC_FRIAG8.788e-4488.30Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 ... [more]
CYC_SOLLC1.148e-4388.30Cytochrome c OS=Solanum lycopersicum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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