CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCA_TAKRU (Cytochrome c-a OS=Takifugu rubripes GN=cyc-a PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.263e-26
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  +C+QCHTV K   HK GPNL GLFGR++G    YSY+ AN    + W+E+TL  YL NPKKYIPGTKM F G++K ++R D+IAY+KE+T+
Sbjct:   11 FVQRCSQCHTVTKEGRHKVGPNLWGLFGRKTGQAEGYSYTQANIEKGITWDEETLNVYLQNPKKYIPGTKMNFAGIRKKRERLDIIAYIKEATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_DICDI (Cytochrome c OS=Dictyostelium discoideum GN=cytC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKG---MAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            FK +CAQCHT   GA +KQGPNL GLF  +S + P Y+YS  NK      ++W E+TL++YL NPKKYIP TKM F G K  QDRAD++AYL++ST
Sbjct:   17 FKARCAQCHTTANGAPNKQGPNLYGLFFPKSRSFPGYAYSDPNKNTGKFCIMWGEQTLFDYLENPKKYIPKTKMAFAGFKSEQDRADVVAYLEQST 112          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CAEEL (Cytochrome c OS=Caenorhabditis elegans GN=cyc-2.1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.841e-25
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            +K +C QCH VV     K GP L+G+ GR SGT   + YSAANK   V+W ++TL+ YLLNPKKYIPGTKMVF GLKK  +RADLI Y++  +A
Sbjct:   16 YKQRCLQCH-VVDSTATKTGPTLHGVIGRTSGTVSGFDYSAANKNKGVVWTKETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEVESA 108          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC7_YEAST (Cytochrome c iso-2 OS=Saccharomyces cerevisiae GN=CYC7 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.841e-25
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 280
            FKT+C QCHT+ +G  +K GPNL+G+FGR SG    YSY+ AN    V W+E ++  YL NPKKYIPGTKM F GLKK +DR DLI Y+ ++
Sbjct:   20 FKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPKKYIPGTKMAFAGLKKEKDRNDLITYMTKA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_CAEEL (Probable cytochrome c OS=Caenorhabditis elegans GN=ZC116.2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.136e-25
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FK +C QCH VV     K GP LNG+ GRQSG    + YSAANK   V+W+ +TL++YL +PKKYIPGTKMVF GLKK  +RADLI +++   A
Sbjct:   26 FKQRCEQCH-VVNSLQTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGVVWDRQTLFDYLADPKKYIPGTKMVFAGLKKADERADLIKFIEVEAA 118          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CAEBR (Cytochrome c OS=Caenorhabditis briggsae GN=cyc-2.1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.193e-24
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            +K +C QCH VV     K GP L G+ GR SGT   + YSAANK   V+W  +TL+ YLLNPKKYIPGTKMVF GLKK  +RADLI Y++
Sbjct:   16 YKQRCLQCH-VVDSTATKTGPTLYGVIGRTSGTVAGFDYSAANKSKGVVWTRETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIE 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ASHGO (Cytochrome c OS=Ashbya gossypii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.193e-24
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 271
            FKT+C QCHT  KG  HK GPNL+G+F RQSG    YSY+ A     V W+ +++ +YL NPKKYIPGTKM F GLKK +DR DLI Y+
Sbjct:   17 FKTRCLQCHTTEKGGPHKVGPNLHGVFSRQSGQVSGYSYTDAMINRNVTWDAQSMSDYLENPKKYIPGTKMAFGGLKKEKDRNDLITYM 105          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_EUGGR (Cytochrome c OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.558e-24
Identity = 49/90 (54.44%), Postives = 69/90 (76.67%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            F+++ AQCH+  KG  +  GP+L G++GR SG+ P Y+YS ANK  A++WEE+TL+ +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:   10 FESRAAQCHSAQKGV-NSTGPSLWGVYGRTSGSVPGYAYSNANKNAAIVWEEETLHKFLENPKKYVPGTKMAFAGIKAKKDRQDIIAYMK 98          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_ASCSU (Cytochrome c type-2 OS=Ascaris suum PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.035e-24
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            FKT+C  CH VV     K GP+LNG+FG  +GT   Y YS ANK   ++W ++T+++YL NPKKY+PG+KM+F GLKK +DRADLI+Y++
Sbjct:   16 FKTRCLMCH-VVDSDKAKSGPSLNGIFGSSAGTVKGYDYSNANKNANIVWTKETMFDYLANPKKYMPGSKMIFAGLKKVEDRADLISYIE 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC1_DROME (Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c-d PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.658e-24
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 280
            F  KCAQCHT   G  HK GPNL G+ GR+ GT   Y Y+ AN    V W E  L  YL +PKKYIPGTKMVF GLKK ++RADLIA+LK +
Sbjct:   13 FVQKCAQCHTYEVGGKHKVGPNLGGVVGRKCGTAAGYKYTDANIKKGVTWTEGNLDEYLKDPKKYIPGTKMVFAGLKKAEERADLIAFLKSN 104          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYCA_TAKRU8.263e-2656.38Cytochrome c-a OS=Takifugu rubripes GN=cyc-a PE=3 ... [more]
CYC_DICDI1.079e-2557.29Cytochrome c OS=Dictyostelium discoideum GN=cytC P... [more]
CYC_CAEEL1.841e-2557.45Cytochrome c OS=Caenorhabditis elegans GN=cyc-2.1 ... [more]
CYC7_YEAST1.841e-2556.52Cytochrome c iso-2 OS=Saccharomyces cerevisiae GN=... [more]
CYC2_CAEEL9.136e-2556.38Probable cytochrome c OS=Caenorhabditis elegans GN... [more]
CYC_CAEBR1.193e-2458.89Cytochrome c OS=Caenorhabditis briggsae GN=cyc-2.1... [more]
CYC_ASHGO1.193e-2458.43Cytochrome c OS=Ashbya gossypii GN=CYC1 PE=3 SV=2[more]
CYC_EUGGR1.558e-2454.44Cytochrome c OS=Euglena gracilis PE=1 SV=1[more]
CYC2_ASCSU2.035e-2454.44Cytochrome c type-2 OS=Ascaris suum PE=2 SV=3[more]
CYC1_DROME2.658e-2458.70Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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