CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC22_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 277
            KC  CH + +GA +K GP L+GL GR SG+ P ++YS ANK   + W++ T  +Y+ +P+  IPGTKMVF G+K  +++ DL A+L +
Sbjct:   12 KCTPCHNIGEGATNKVGPVLDGLEGRHSGSIPGFNYSEANKKSGLTWDKATFKSYIADPRAKIPGTKMVFAGIKNEKEQEDLWAFLTQ 99          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_RHOAC (Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            KCA CH +  GA +  GP+LNG+  R++G    ++YS ANK   + W+E T   Y+  P+K +PGTKM FPGL    DR ++ AYL +  A
Sbjct:   13 KCAACHKIGPGAKNGVGPSLNGVANRKAGQAEGFAYSDANKNSGLTWDEATFKEYITAPQKKVPGTKMTFPGLPNEADRDNIWAYLSQFKA 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CY550_NITWI (Cytochrome c-550 OS=Nitrobacter winogradskyi PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 277
            KC  CH + + A +K GP L+GL GR SG    Y+YS ANK   + W E     Y+ +PK  +PGTKMVF G+KK  +  +L AY+ +
Sbjct:   12 KCKACHEIGESAKNKVGPELDGLDGRHSGAVEGYAYSPANKASGITWTEAEFKEYIKDPKAKVPGTKMVFAGIKKDSELDNLWAYVSQ 99          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_AGRTC (Cytochrome c2 OS=Agrobacterium tumefaciens (strain II Chrys) PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.664e-16
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANK---GMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 271
            +C+ CH + +GA +K GP LNG+ GR +G  P Y+YS A K   G  ++W  + L ++L  PKK IPG KM   G+ KP++  +LIAYL
Sbjct:   13 RCSACHAIGEGAKNKVGPQLNGIIGRTAGGDPDYNYSNAMKKAGGEGLVWTPQELRDFLSAPKKKIPGNKMALAGISKPEELDNLIAYL 101          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_TETPY (Cytochrome c OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            F ++C+ CH +   +     P L G+ GR++G   +++YS   KG  + W EK L+ +L NP K++PGTKM F GL   +DRADLIAYLK
Sbjct:   21 FDSQCSACHAIEGDS--TAAPVLGGVIGRKAGQE-KFAYSKGMKGSGITWNEKHLFVFLKNPSKHVPGTKMAFAGLPADKDRADLIAYLK 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_RICTY (Cytochrome c homolog OS=Rickettsia typhi GN=cycM PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            KC  CH++ K   +K GP+L  + GR   +   Y YS A   +  +W+++ L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   83 KCLMCHSLDKDGPNKLGPHLWNIVGRSKASITDYKYSFAISKLGGVWDDENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CY550_THINO (Cytochrome c-550 (Fragment) OS=Thiobacillus novellus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANK---GMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            KC  CH V +GA +K GP LNG+ GR+ G+   ++YS   K       +W  + L  YL NPK Y+PG KMVF GL K     DL AYLK   A
Sbjct:   10 KCMACHAVGEGAKNKVGPELNGIIGRKMGSIEGFNYSDTLKEHNAKGDVWTAEILSQYLANPKGYMPGVKMVFAGLPKEIRADDLEAYLKTFNA 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_RICPR (Cytochrome c homolog OS=Rickettsia prowazekii GN=cycM PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            KC  CH++ K   +K GP+L  + GR   +   Y YS A   +  +W+++ L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   83 KCLMCHSLDKDGPNKLGPHLWNIVGRPKASITDYKYSFAISKLGGVWDDENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC22_RHOFU (Cytochrome c2 iso-2 OS=Rhodospirillum fulvum PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   17 CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            C  CH+V  G  +  GP+L G++GR++GT   + +S  +    + W+E TL  YL +PK  IPG KMVF GLK P D A +IAYLK
Sbjct:   10 CKACHSVEAGK-NGVGPSLAGVYGRKAGTLAGFKFSDPHAKSGLTWDEPTLTKYLADPKGVIPGNKMVFAGLKNPADVAAVIAYLK 94          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_RICCN (Cytochrome c homolog OS=Rickettsia conorii GN=cycM PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            KC  CH++ K   +K GP+L  + GR   +   Y YS A   +  +W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   83 KCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC22_RHOCR4.856e-1845.45Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CYC2_RHOAC3.147e-1743.96Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 ... [more]
CY550_NITWI1.562e-1644.32Cytochrome c-550 OS=Nitrobacter winogradskyi PE=1 ... [more]
CYC2_AGRTC2.664e-1644.94Cytochrome c2 OS=Agrobacterium tumefaciens (strain... [more]
CYC_TETPY1.012e-1544.44Cytochrome c OS=Tetrahymena pyriformis PE=1 SV=1[more]
CYCM_RICTY5.025e-1541.38Cytochrome c homolog OS=Rickettsia typhi GN=cycM P... [more]
CY550_THINO5.025e-1545.74Cytochrome c-550 (Fragment) OS=Thiobacillus novell... [more]
CYCM_RICPR6.563e-1541.38Cytochrome c homolog OS=Rickettsia prowazekii GN=c... [more]
CYC22_RHOFU6.563e-1546.51Cytochrome c2 iso-2 OS=Rhodospirillum fulvum PE=1 ... [more]
CYCM_RICCN1.462e-1441.38Cytochrome c homolog OS=Rickettsia conorii GN=cycM... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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