CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_AGRT5 (Cytochrome c homolog OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cycM PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAA----NKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            KC  CHT   G  +K GPNL  +  R   +   +SYSA     +KG +V W+   L  +L  PKK++PGT M F G+KK  +RADLIAYL+  +A
Sbjct:   82 KCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSA 176          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_RICFE (Cytochrome c homolog OS=Rickettsia felis GN=cycM PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            KC  CH++ K   +K GP+L  + GR   +   Y YS A   +  +W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   83 KCLVCHSLDKDGPNKLGPHLWDVAGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_BRAJA (Cytochrome c homolog OS=Bradyrhizobium japonicum GN=cycM PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPR-YSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 271
            KC  CHT  KG  ++ GPNL G+ G   G     +++SAA KG    W    L  ++ NPK +IPGT M F G+ K  +RAD+IAYL
Sbjct:   83 KCGACHTFEKGGPNRVGPNLYGVVGEARGEGRNGFNFSAAMKGKGGTWTFDDLNKFIANPKGFIPGTAMGFAGIPKDSERADVIAYL 169          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC22_RHOMO (Cytochrome c2 iso-2 OS=Rhodospirillum molischianum PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   11 TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            T C  CH+V  G  +  GP+L G++GR++GT   + +S  +    + W+E TL  YL +PK  IPG KMVF GLK P D   +I YLK
Sbjct:    8 TLCKACHSVEAGK-NGVGPSLAGVYGRKAGTISGFKFSDPHIKSGLTWDEPTLTKYLADPKTVIPGNKMVFAGLKNPDDVKAVIEYLK 94          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCM_RICBR (Cytochrome c homolog OS=Rickettsia bellii (strain RML369-C) GN=cycM PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            KC  CH++ K   +K GP+L  + GR   +   Y YS A   +   W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   81 KCLMCHSLDKDGPNKIGPHLWDVAGRPKASITDYKYSPALSALGGNWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 167          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC21_RHOFU (Cytochrome c2 iso-1 OS=Rhodospirillum fulvum PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKM--VFPGLKKPQDRADLIAYLK 274
            +C  CH++  G  +  GP+L+G +GR+ G  P Y YSAA+    +  +E  L NYL NPK  IPG KM   F GLKKP+D   +I YLK
Sbjct:    9 QCKACHSIEAGK-NGVGPSLSGAYGRKVGLAPNYKYSAAHLASGMTIDEAMLTNYLANPKATIPGNKMGASFGGLKKPEDVKAVIEYLK 96          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC21_RHOMO (Cytochrome c2 iso-1 OS=Rhodospirillum molischianum PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKM--VFPGLKKPQDRADLIAYLK 274
            +C  CH++  G  +  GP+L+G +GR+ G  P Y YS A+    +  ++  L  YL NPK+ IPG KM   F GLK P D A +IAYLK
Sbjct:   10 QCKACHSIDAGK-NGVGPSLSGAYGRKVGLAPNYKYSPAHLASGMTIDDAMLTKYLANPKETIPGNKMGAAFGGLKNPADVAAVIAYLK 97          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCY_RHOCA (Cytochrome c-type cyt cy OS=Rhodobacter capsulatus GN=cycY PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 271
            F   C  CH +     +  GP+LNG+ GR + T   + YS A K     W  + L  YL++PK  +PGTKM F GL +  DRA++IAYL
Sbjct:  108 FNKTCKACHKI--DGKNAVGPHLNGVIGRATATVEGFKYSTAMKNHVGNWTPERLDIYLVSPKAEVPGTKMSFVGLPEAADRANVIAYL 194          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CY552_PARDE (Cytochrome c-552 OS=Paracoccus denitrificans GN=cycM PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            KC  CH +    G   GP+LNG+ GR       ++YS   K     W  + L  +L NPK  + GTKM F GL K +DRA+LIAYL+
Sbjct:   89 KCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 173          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC23_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAV-IWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 274
            +C  CH V  G     GP+L GLFG + G  P + YS A+   A    +E  L  YL +PK  +PG KMVF GLK P D   ++AYLK
Sbjct:    9 QCQACHKVEAGEDGV-GPSLFGLFGHKLGQAPGFKYSEAHLKFAQQTVDEPFLTKYLADPKASLPGNKMVFAGLKNPDDVKAVLAYLK 95          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYCM_AGRT51.462e-1444.21Cytochrome c homolog OS=Agrobacterium tumefaciens ... [more]
CYCM_RICFE2.494e-1441.38Cytochrome c homolog OS=Rickettsia felis GN=cycM P... [more]
CYCM_BRAJA3.257e-1444.83Cytochrome c homolog OS=Bradyrhizobium japonicum G... [more]
CYC22_RHOMO4.254e-1444.32Cytochrome c2 iso-2 OS=Rhodospirillum molischianum... [more]
CYCM_RICBR5.556e-1441.38Cytochrome c homolog OS=Rickettsia bellii (strain ... [more]
CYC21_RHOFU5.556e-1446.07Cytochrome c2 iso-1 OS=Rhodospirillum fulvum PE=1 ... [more]
CYC21_RHOMO6.142e-1343.82Cytochrome c2 iso-1 OS=Rhodospirillum molischianum... [more]
CYCY_RHOCA2.334e-1241.57Cytochrome c-type cyt cy OS=Rhodobacter capsulatus... [more]
CY552_PARDE1.158e-1142.53Cytochrome c-552 OS=Paracoccus denitrificans GN=cy... [more]
CYC23_RHOCR4.402e-1144.32Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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