CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ACENE (Cytochrome c OS=Acer negundo PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK MAV W   TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGYNTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MAIZE (Cytochrome c OS=Zea mays PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.958e-43
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV+WEE TLY+YLLNP KYIPGTKMVFPGL KPQ+RADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVVWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKEATA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SOLTU (Cytochrome c OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.361e-43
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHK+GPNLNGLFGRQSGTT  YSYS ANK MAV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVDKGAGHKEGPNLNGLFGRQSGTTAGYSYSNANKNMAVTWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_GUIAB (Cytochrome c OS=Guizotia abyssinica PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.696e-43
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCA+CHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV W++ +LY+YLLNPKKYIPGTKMVFPGLKKP++RADLIAYLK STA
Sbjct:   18 FKTKCAZCHTVZKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVAWZZBSLYDYLLNPKKYIPGTKMVFPGLKKPZZRADLIAYLKASTA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SPIOL (Cytochrome c OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.716e-43
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            FKTKCAQCHTV  GAGHKQGPNLNGLFGRQSGT   YSYSAANK  AVIW E TLY YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+ST
Sbjct:   18 FKTKCAQCHTVDLGAGHKQGPNLNGLFGRQSGTAASYSYSAANKNKAVIWSEDTLYEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKDST 110          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_FAGES (Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.716e-43
Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV W E TLY YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK+ST
Sbjct:   18 FKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVTWGEDTLYEYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKBST 110          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_PASSA (Cytochrome c OS=Pastinaca sativa PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.657e-42
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCA+CHTV  GAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV+W + TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK +TA
Sbjct:   18 FKTKCAZCHTVZLGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVLWABBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKHATA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_WHEAT (Cytochrome c OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.164e-42
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV  GAGHKQGPNL+GLFGRQSGTT  YSYSAANK  AV WEE TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++T+
Sbjct:   18 FKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATS 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_NIGDA (Cytochrome c OS=Nigella damascena PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.164e-42
Identity = 78/94 (82.98%), Postives = 87/94 (92.55%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCA+CHTV +GAGHK+GPNL+GLFGRQSGT   YSYSAANK  AV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKP++RA+L+AYLKESTA
Sbjct:   18 FKTKCAZCHTVBZGAGHKZGPNLHGLFGRQSGTVAGYSYSAANKNKAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPZZRABLLAYLKESTA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_GINBI (Cytochrome c OS=Ginkgo biloba PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.646e-40
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCA+CHTV KGAGHKQGPNL+GLFGRQSGTT  YSYS  NK  AV W ++TLY YLLNPKKYIPGTKMVFPGLKKP++RADLI+YLK++T+
Sbjct:   18 FKTKCAZCHTVZKGAGHKQGPNLHGLFGRQSGTTAGYSYSTGNKNKAVNWGZZTLYEYLLNPKKYIPGTKMVFPGLKKPZZRADLISYLKQATS 111          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_ACENE1.499e-4389.36Cytochrome c OS=Acer negundo PE=1 SV=1[more]
CYC_MAIZE1.958e-4387.23Cytochrome c OS=Zea mays PE=1 SV=1[more]
CYC_SOLTU4.361e-4387.23Cytochrome c OS=Solanum tuberosum PE=1 SV=1[more]
CYC_GUIAB5.696e-4384.04Cytochrome c OS=Guizotia abyssinica PE=1 SV=1[more]
CYC_SPIOL9.716e-4388.17Cytochrome c OS=Spinacia oleracea PE=1 SV=1[more]
CYC_FAGES9.716e-4388.17Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1[more]
CYC_PASSA1.657e-4285.11Cytochrome c OS=Pastinaca sativa PE=1 SV=1[more]
CYC_WHEAT2.164e-4286.17Cytochrome c OS=Triticum aestivum PE=1 SV=1[more]
CYC_NIGDA2.164e-4282.98Cytochrome c OS=Nigella damascena PE=1 SV=1[more]
CYC_GINBI2.646e-4078.72Cytochrome c OS=Ginkgo biloba PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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