CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ENTIN (Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.967e-37
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FK KCA+CHTV  GAGHKQGPNLNG FGR SGT   +SYSAA+K     W++ TLY+YLLNPKKYIPGTKMVF GLKKP++RADLIA+LK++TA
Sbjct:   18 FKAKCAZCHTVBAGAGHKQGPNLNGAFGRTSGTAAGFSYSAABKBKTADWBZBTLYDYLLNPKKYIPGTKMVFAGLKKPZBRADLIAFLKDATA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CHLRE (Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.150e-35
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCH   KG GHKQGPNL GLFGR SGT   ++YS ANK  AV W E TLY YLLNPKKY+PG KMVF GLKKP++RADLIAYLK++TA
Sbjct:   19 FKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTAAGFAYSKANKEAAVTWGESTLYEYLLNPKKYMPGNKMVFAGLKKPEERADLIAYLKQATA 112          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SCHGR (Cytochrome c OS=Schistocerca gregaria PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.031e-32
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+GLFGR++G  P +SY+ ANK   + W+E TL+ YL NPKKYIPGTKMVF GLKKP++RADLIAYLKEST
Sbjct:   15 FVQRCAQCHTVEAGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKSKGITWDENTLFIYLENPKKYIPGTKMVFAGLKKPEERADLIAYLKEST 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_PONAB (Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G  P YSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_PANTR (Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G  P YSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_HUMAN (Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G  P YSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_GORGO (Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G  P YSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MACSY (Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G  P YSY+AANK   + W E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MACMU (Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G  P YSY+AANK   + W E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_THEAN (Cytochrome c OS=Theileria annulata GN=TA12950 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.001e-31
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FK+KCAQCHT+ KG   KQGPNL G +GR+SG+T  Y+YS ANK   ++W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLKE+++
Sbjct:   22 FKSKCAQCHTINKGGSVKQGPNLFGFYGRKSGSTD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_ENTIN7.967e-3772.34Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=... [more]
CYC_CHLRE1.150e-3573.40Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 ... [more]
CYC_SCHGR2.031e-3267.74Cytochrome c OS=Schistocerca gregaria PE=1 SV=2[more]
CYC_PONAB7.716e-3266.67Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3[more]
CYC_PANTR7.716e-3266.67Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2[more]
CYC_HUMAN7.716e-3266.67Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2[more]
CYC_GORGO7.716e-3266.67Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE... [more]
CYC_MACSY2.932e-3165.59Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3[more]
CYC_MACMU2.932e-3165.59Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2[more]
CYC_THEAN5.001e-3165.96Cytochrome c OS=Theileria annulata GN=TA12950 PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top