CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.482e-30
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV K   HK GPNL GLFGR++G  P +SY+ ANK   ++W E TL+ YL NPKKYIPGTKM+F G+KK  +RADLIAYLK+ST+
Sbjct:   11 FVQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_TRACR (Cytochrome c OS=Trachypithecus cristatus GN=CYCS PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 2
Query:   14 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            KC+QCHTV KG  HK GPN +GLFGR++G  P YSY+AANK   + W E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   14 KCSQCHTVEKGGKHKTGPNHHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SARPE (Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+GLFGR++G  P ++Y+ ANK   + W E TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   15 FVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MANSE (Cytochrome c OS=Manduca sexta PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+G FGR++G  P +SYS ANK   + W E TL+ YL NPKKYIPGTKMVF GLKK  +RADLIAYLK++T
Sbjct:   15 FVQRCAQCHTVEAGGKHKIGPNLHGFFGRKTGQAPGFSYSDANKAKGITWNEDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV KG  HK GPNL GLFGR++G  P +SY+ ANK   VIW E+TL  YL NPKKYIPGTKM+F G+KK  +R DLI YLKE+T+
Sbjct:   11 FIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWTEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SAMCY (Cytochrome c OS=Samia cynthia PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+G +GR++G  P +SYS ANK   + W + TL+ YL NPKKYIPGTKMVF GLKK  +RADLIAYLKEST
Sbjct:   15 FVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEST 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_LUCCU (Cytochrome c OS=Lucilia cuprina PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+GLFGR++G  P ++Y+ ANK   + W++ TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   15 FVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ASPNG (Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F+T+CAQCHTV  G  HK GPNL+GLFGR++G +  Y+Y+ ANK   V W+E TL++YL NPKK+IPGTKM F GLKK ++R DLI YLKESTA
Sbjct:   18 FQTRCAQCHTVEAGGPHKVGPNLHGLFGRKTGQSEGYAYTDANKQAGVTWDENTLFSYLENPKKFIPGTKMAFGGLKKGKERNDLITYLKESTA 111          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV KG  HK GPNL GLFGR++G  P +SY+ ANK   VIW E+TL  YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MIRLE (Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G  P +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKIAT 103          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC1_XENTR2.482e-3063.83Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]
CYC_TRACR3.242e-3065.56Cytochrome c OS=Trachypithecus cristatus GN=CYCS P... [more]
CYC_SARPE3.242e-3062.37Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2[more]
CYC_MANSE3.242e-3064.52Cytochrome c OS=Manduca sexta PE=1 SV=2[more]
CYC2_RAT3.242e-3064.89Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_SAMCY4.234e-3064.52Cytochrome c OS=Samia cynthia PE=1 SV=2[more]
CYC_LUCCU4.234e-3061.29Cytochrome c OS=Lucilia cuprina PE=1 SV=2[more]
CYC_ASPNG4.234e-3063.83Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=... [more]
CYC2_MOUSE4.234e-3063.83Cytochrome c, testis-specific OS=Mus musculus GN=C... [more]
CYC_MIRLE5.530e-3064.52Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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