CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_HORSE (Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G  P ++Y+ ANK   + W+E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_DRONO (Cytochrome c OS=Dromaius novae-hollandiae GN=CYC PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNLNGLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLNGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CYPCA (Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV  G  HK GPNL GLFGR++G  P +SY+ ANK   ++W+E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   11 FVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWBEZTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_BOVIN (Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV KG  HK GPNL GLFGR++G  P +SY+ ANK   +IW E+TL  YL NPKKYIPGTKM+F GLKK  +R DLI YLK++T+
Sbjct:   11 FIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTEANKNKGIIWGEQTLMEYLENPKKYIPGTKMIFAGLKKKSEREDLIEYLKQATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.222e-30
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G  P +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.222e-30
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G  P +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CHESE (Cytochrome c OS=Chelydra serpentina PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.222e-30
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV KG  HK GPNLNGL GR++G    +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLNGLIGRKTGQAEGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKDATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_BOVIN (Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.222e-30
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G  P +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_LAMTR (Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV K   HK GPNL+GLFGR++G  P +SY+ ANK   ++W ++TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:   11 FVQKCSQCHTVEKAGKHKTGPNLSGLFGRKTGQAPGFSYTDANKSKGIVWNQETLFVYLENPKKYIPGTKMIFAGIKKEGERKDLIAYLKKSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_EMENI (Cytochrome c OS=Emericella nidulans GN=cycA PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F+T+C QCHTV  G GHK GPNL+GLFGR++G    Y+Y+ ANK   V W+E +L+ YL NPKK+IPGTKM F GLKK ++R DLI YLKESTA
Sbjct:   20 FETRCKQCHTVENGGGHKVGPNLHGLFGRKTGQAEGYAYTDANKQADVTWDENSLFKYLENPKKFIPGTKMAFGGLKKTKERNDLITYLKESTA 113          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_HORSE5.530e-3062.37Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2[more]
CYC_DRONO5.530e-3062.77Cytochrome c OS=Dromaius novae-hollandiae GN=CYC P... [more]
CYC_CYPCA5.530e-3062.77Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc... [more]
CYC2_BOVIN5.530e-3063.83Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3[more]
CYC_SHEEP7.222e-3063.44Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PIG7.222e-3063.44Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]
CYC_CHESE7.222e-3062.77Cytochrome c OS=Chelydra serpentina PE=1 SV=2[more]
CYC_BOVIN7.222e-3063.44Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2[more]
CYC_LAMTR9.432e-3060.64Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV... [more]
CYC_EMENI9.432e-3062.77Cytochrome c OS=Emericella nidulans GN=cycA PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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