CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ATESP (Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.609e-29
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    ++Y+ ANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   11 FIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQASGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_XENLA (Cytochrome c, testis-specific OS=Xenopus laevis GN=cyct PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.609e-29
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   ++W+E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEDTLMVYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_STRCA (Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLDGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_RABIT (Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKDERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_LAMGU (Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ESCGI (Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CAMDR (Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYCB_TAKRU (Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV +G  HK GPNL GLFGR++G    +SY+ ANK   +IW E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK ST+
Sbjct:   12 FVQKCAQCHTVEQGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWSEETLMVYLENPKKYIPGTKMIFAGIKKKTERADLIAYLKSSTS 105          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC1B_XENLA (Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-B PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV K   HK GPNL GLFGR++G  P +SY+ ANK   ++W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:   11 FIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEETLLEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_RAT (Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.744e-29
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_ATESP1.609e-2962.37Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3[more]
CYC2_XENLA1.609e-2961.70Cytochrome c, testis-specific OS=Xenopus laevis GN... [more]
CYC_STRCA2.101e-2961.70Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2[more]
CYC_RABIT2.101e-2963.44Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1... [more]
CYC_LAMGU2.101e-2963.44Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2[more]
CYC_ESCGI2.101e-2963.44Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1... [more]
CYC_CAMDR2.101e-2963.44Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 S... [more]
CYCB_TAKRU2.101e-2963.83Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 ... [more]
CYC1B_XENLA2.101e-2962.77Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-... [more]
CYC_RAT2.744e-2963.44Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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