CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MOUSE (Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.744e-29
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  KCAQCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   11 FVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_THELA (Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.584e-29
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            FKT+CAQCH+V +G  +K GPNL+GLFGR++G+   YSY+ ANK   + W E TL+ YL NPKK+IPGTKM F GLKK +DR DLI YLKE+T
Sbjct:   18 FKTRCAQCHSVEQGGANKIGPNLHGLFGRKTGSVEGYSYTDANKQAGITWNEDTLFEYLENPKKFIPGTKMAFGGLKKNKDRNDLITYLKEAT 110          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_NEUCR (Cytochrome c OS=Neurospora crassa GN=cyc-1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.584e-29
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKT+CAQCHT+ +G G+K GP L+GLFGR++G+   Y+Y+ ANK   + W+E TL+ YL NPKKYIPGTKM F GLKK +DR D+I ++KE+TA
Sbjct:   15 FKTRCAQCHTLEEGGGNKIGPALHGLFGRKTGSVDGYAYTDANKQKGITWDENTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDIITFMKEATA 108          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_HAEIR (Cytochrome c OS=Haematobia irritans PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.584e-29
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+GLFGR++G    ++Y+ ANK   + W++ TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   15 FVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_APTPA (Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.584e-29
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+G+FGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGIFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_TETNG (Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV +G  HK GPNL GLFGR++G    +SY+ ANK   +IW E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK ST+
Sbjct:   11 FVQKCAQCHTVEEGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWNEDTLLEYLENPKKYIPGTKMIFAGIKKKAERQDLIAYLKSSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SCHPO (Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKT+CAQCHTV KG  +K GPNL+G+FGR++G    +SY+ AN+   + W+E+TL+ YL NPKKYIPGTKM F G KKP DR ++I YLK++T+
Sbjct:   15 FKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKATS 108          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_MELGA (Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_GIBZE (Cytochrome c OS=Gibberella zeae GN=CYC1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            FKT+CAQCHTV K  G+K GP L+GL+GR++G+   YSY+ ANK   + W + TL+ YL NPKKYIPGTKM F GLKK +DR DLIAYLK+ST
Sbjct:   16 FKTRCAQCHTVEKDGGNKIGPALHGLWGRKTGSVEGYSYTDANKQKGIEWNDDTLFEYLENPKKYIPGTKMAFGGLKKAKDRNDLIAYLKDST 108          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CHICK (Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_MOUSE2.744e-2963.44Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1... [more]
CYC_THELA3.584e-2962.37Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1[more]
CYC_NEUCR3.584e-2959.57Cytochrome c OS=Neurospora crassa GN=cyc-1 PE=1 SV... [more]
CYC_HAEIR3.584e-2960.22Cytochrome c OS=Haematobia irritans PE=1 SV=2[more]
CYC_APTPA3.584e-2960.64Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=... [more]
CYC_TETNG6.114e-2962.77Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3... [more]
CYC_SCHPO6.114e-2958.51Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 ... [more]
CYC_MELGA6.114e-2960.64Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV... [more]
CYC_GIBZE6.114e-2963.44Cytochrome c OS=Gibberella zeae GN=CYC1 PE=3 SV=1[more]
CYC_CHICK6.114e-2960.64Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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