FC871928

Overview
NameFC871928
Unique NameFC871928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.896e-14
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3 
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFE L +RAVAVVVDPIQSVK  VVIDAFRLI+ Q  +L   PR  TSN+G+L  P++ S IH
Sbjct:  119 TQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIH 184
[Close]
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.605e-13
Identity = 41/66 (62.12%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFE L  RAVAVVVDP+QSV+  VVIDAFR I          PR  TSNLGHL  PSIQ+ IH
Sbjct:  129 TQQSFEQLQSRAVAVVVDPLQSVRGKVVIDAFRTIKTSP---TAEPRQITSNLGHLQDPSIQALIH 191
The following BLAST results are available for this feature:
BLAST of FC871928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPN11_ENCCU1.896e-1463.6426S proteasome regulatory subunit RPN11 OS=Encepha... [more]
PSDE_DICDI1.605e-1362.1226S proteasome non-ATPase regulatory subunit 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CG12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871928 ID=FC871928; Name=FC871928; organism=Citrus sinensis; type=EST; length=278bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTATATTAGTCACCCATCAAAGTTTTGAAGC
TTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCAATCCAGAGCGTGA
AAAGTAATGTAGTGATTGATGCCTTCCGCTTGATTAATCCCCAAACCATG
ATGCTTGTTCAATAACCACGGCATACAACTTCCAATCTTGGTCATCTTAA
TAAGCCATCCATCCAATCATTTATCCAT
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