CX044046

Overview
NameCX044046
Unique NameCX044046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.170e-22
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            ++K DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQITG
Sbjct:   93 EEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          

HSP 2 Score: 50.8322 bits (120), Expect = 2.170e-22
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPL-------GSSS------NEVSTFASAQVDWKETREAHVFK 210
            S+    +VFDPFS D+W P        GS S      ++ + FA A++DWKET EAHVFK
Sbjct:    2 SMIRRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFK 61          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.175e-22
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKNDKWHRVER  G+F+RRFRLPENAK+DQVKASMENGVL               +I+I+G
Sbjct:   88 EDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          

HSP 2 Score: 46.595 bits (109), Expect = 2.175e-22
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETREAHVFK 210
            S+    +VFDPF+ D W P           +S  + + FA+A+VDWKET E+HVFK
Sbjct:    2 SLVRRSNVFDPFA-DFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFK 56          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.771e-22
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            ++K DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQ+TG
Sbjct:  100 EEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          

HSP 2 Score: 50.0618 bits (118), Expect = 4.771e-22
Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPLGS--------------------SSNEVSTFASAQVDWKETREAHVFK 210
            S+    +VFDPFS D+W P                       +S+E + FA A++DWKET EAHVFK
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFK 68          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.227e-22
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKNDKWHRVER  GKFVRRFRLPE+AK+++VKA +ENGVL               +I+I+G
Sbjct:   90 EDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          

HSP 2 Score: 49.6766 bits (117), Expect = 6.227e-22
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETREAHVFK 210
            SI    +VFDPF+ D+WA            +   S+E + FA+A+VDWKET EAHVFK
Sbjct:    2 SIVRRSNVFDPFA-DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFK 58          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.331e-21
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 329
            +DKND+WHRVER  GKF+RRFRLPENAK+DQVKA+MENGVL
Sbjct:   82 EDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          

HSP 2 Score: 46.2098 bits (108), Expect = 2.331e-21
Identity = 26/50 (52.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query:   97 DPFSSDVWAP----------LGSSS--NEVSTFASAQVDWKETREAHVFK 210
            DPFS DVW P          L +SS   E S F S ++DWKET EAHVFK
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFK 50          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-21
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 329
            ++KND WHRVER  G+F+R+FRLPENAK+DQVKA MENGVL
Sbjct:  101 EEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          

HSP 2 Score: 50.447 bits (119), Expect = 3.011e-21
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   55 MSLIPSIF---GNRS-VFDPFSSD-VWAPL------------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIP+ +   G RS +FDPFS D +W P               ++ E + FA+A++DWKET EAHVFK
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFK 69          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.478e-20
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKNDKWHRVER  GKFVRRFRL E+AK+++VKA +ENGVL               +IQI+G
Sbjct:   90 EDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          

HSP 2 Score: 46.9802 bits (110), Expect = 2.478e-20
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETREAHVFK 210
            SI    +VFDPF+ D+WA            +    +E + FA+A++DWKET EAHVFK
Sbjct:    2 SIVRRTNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFK 58          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.815e-14
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3
Query:  213 KND-KWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 329
            KND +WH VER  GKF RRFRLP  A++DQV ASM+NGVL
Sbjct:   90 KNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          

HSP 2 Score: 37.7354 bits (86), Expect = 7.815e-14
Identity = 26/57 (45.61%), Postives = 30/57 (52.63%), Query Frame = 1
Query:   55 MSLIPSIFGNRSVFDPFSSDVWA---PLG---SSSNEVSTFASAQVDWKETREAHVF 207
            MSL+ S  GN  V DP S D WA   P G   S +       + +VDWKET  AHVF
Sbjct:    1 MSLVRS--GN--VLDPMSVDFWADADPFGAVRSLAERCPVLTNVRVDWKETPTAHVF 53          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND WHRVER  GKF+R FRLP+NAK+DQVKASMENGVL               +I+I+G
Sbjct:   13 EDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 41/80 (51.25%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  153 NIRQCSSRLERNPGSSCFQDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            NI Q S    R       ++K+DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQI+G
Sbjct:   85 NILQISGERSREQ-----EEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
The following BLAST results are available for this feature:
BLAST of CX044046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
HS174_ORYSJ2.170e-2259.6817.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ2.175e-2261.2916.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS181_ORYSJ4.771e-2258.0618.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT6.227e-2256.4516.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA2.331e-2182.9318.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_CHERU3.011e-2175.6118.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS16B_WHEAT2.478e-2056.4516.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS166_ORYSJ7.815e-1470.0016.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN1.227e-1358.06Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS177_ORYSJ1.603e-1351.2517.7 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15A07-A13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044046 ID=CX044046; Name=CX044046; organism=Citrus sinensis; type=EST; length=573bp
GATAAATAAGCAAACGCTTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGC
AAAAATGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACC
CATTTTCCTCGGACGTCTGGGCGCCCCTTGGCTCCTCCAGCAACGAGGTG
TCAACATTCGCCAGTGCTCAAGTCGATTGGAAAGAAACCCGGGAAGCTCA
TGTTTTCAAGACAAGAACGACAAATGGCACCGTGTTGAGAGGGGCCGCGG
CAAGTTCGTGAGGAGGTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAG
TTAAGGCATCAATGGAGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTG
GAGGAGAAGAAGCCTGAGGTCAAATCCATTCAGATCACTGGTTGAAACTC
TCCGTTAATTGCAGCCTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTT
AATGAACGATGTGCGATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATG
TAATGTGTTGTCGACTGCTTTTTTAAGTAATAAAAATATGTTGTTTTCTT
GAAGGAGAAAAAAAAAAAAAAAA
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