EY665797

Overview
NameEY665797
Unique NameEY665797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.357e-21
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  233 MASATLSVAKSALQGNGKGFSEFSGLR---NSASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            ++S   + +KSA+      F++FSGL+   N+A L    + S      D +       + +G+ +      A   K++VAINGFGRIGRNF+RCW GR DS +++V I+DT GVK ASHLLKYDS LG
Sbjct:    7 VSSVFSTSSKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAFGGVSDANDAFFNAVNTMGAPARTSN--APSMKVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILG 132          

HSP 2 Score: 29.6462 bits (65), Expect = 1.357e-21
Identity = 24/74 (32.43%), Postives = 29/74 (39.19%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKG 818
            F++DV   G D I+ DGK I+V SNR P   P                           + G KK L   PGKG
Sbjct:  134 FDSDVV-AGEDSITVDGKTIKVVSNRNPLELP-WKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKG 205          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.449e-20
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  233 MASATLSVAKSALQGNGKG-FSEFSGLRN---SASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            +A+   +   S  Q  G+  F++FSG++    S+ L   +  S      D +     + S + +++ G        K++VAINGFGRIGRNF+RCW GR DS +E+V I+DT GVK ASHLLKYDS LG
Sbjct:    7 VATVRATTKSSVCQVQGRSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFG-----PTMKVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILG 130          

HSP 2 Score: 29.6462 bits (65), Expect = 2.449e-20
Identity = 24/74 (32.43%), Postives = 29/74 (39.19%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKG 818
            F+ADV   G D IS +GK I++ SNR P   P                           + G KK L   PGKG
Sbjct:  132 FDADVS-AGEDTISVNGKTIKIVSNRNPLQLP-WKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKG 203          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.100e-16
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2
Query:  452 NGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            NGFGRIGRNFLRC   R++S LE++AI+D+GGVKQASHLLKYDS LG
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLG 47          

HSP 2 Score: 30.0314 bits (66), Expect = 1.100e-16
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPP 692
            F+ADVK V    IS +GK I+V S+R P   P
Sbjct:   49 FDADVKIVDDGHISVNGKSIRVVSSRDPTKLP 80          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.491e-13
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  440 KVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLGIL 598
            +VAINGFGRIGRNFLRCW GR DS LE+V I+DT   +  +HLL+YDS LG L
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKL 55          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  437 LKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLGIL 598
            ++VAINGFGRIGRNF RCW GR++S +E+VA++DT   +  +HLLKYDS LG L
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKL 55          

HSP 2 Score: 20.4014 bits (41), Expect = 3.691e-13
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  627 DGISGDGKGIQVGSNRQPRNPP 692
            + I+ +GK I+  S+R P N P
Sbjct:   65 NSITVNGKTIKCVSDRNPENLP 86          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.086e-13
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  437 LKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLGIL 598
            ++VAINGFGRIGRNF RCW GR+++ +E+VA++DT   +  +HLLKYDS LG L
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKL 55          

HSP 2 Score: 20.4014 bits (41), Expect = 8.086e-13
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  627 DGISGDGKGIQVGSNRQPRNPP 692
            + I+ +GK I+  S+R P N P
Sbjct:   65 NSITVNGKTIKCVSDRNPENLP 86          
The following BLAST results are available for this feature:
BLAST of EY665797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
G3PA_GRAVE1.357e-2142.97Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR2.449e-2041.86Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA1.100e-1676.60Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY31.491e-1367.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANAVT3.691e-1362.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP8.086e-1361.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665797 ID=EY665797; Name=EY665797; organism=Citrus sinensis; type=EST; length=860bp
CCCACGCGGCCGCGCAACCATACATTCGAGTAAGAGGCTATCCAAAATCT
CATCCTCTCATTATCCTCAGCGTAATCCCAAAAGCAGCCACCAGATTCCC
TCCCTCCATCATCCGCCCCTATTACTCATTACTACTTGATCACATATAAC
ATTTTCGAGCATCTTGTCTTGGCTTAGCTTAGCTTAGCCACCACTGCTTG
CTCTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTC
TCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATT
CTCAGGTCTACGCAATTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTG
ATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGC
AGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAAT
CAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCC
GCAAGGACTCTCCACTTGAAATCGTTGCCATCGATGACACCGGAGGTGTC
AAGCAGGCCTCTCACCTCCTCAAGTACGACTCCCCCCTCGGCATTCTTTG
AAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGGTGATGGGAAG
GGCATCCAGGTTGGTTCTAACCGGCAACCCCGTAATCCCCCCCGGGGGGG
ACTTGGGGGCTTCACCTTGGGGATGAAGGGAAAGGGAGGGTTGTAACAAA
AAGGGGGGGCGGGAAAGACCTTTAAGGTGGGGGGAAAAAAAGACTTATAC
AACCCCCCCGGGAAGGGGGGACTTCCCCCCCCAGAGTTTATACTAGACGA
CACCGGGCGG
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