EY665791

Overview
NameEY665791
Unique NameEY665791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665791 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:  431 ELPPVDMFVTTADAELKPTIITVNTVLALLAIDNPVHKLACYVSDDACSPLNF*SLV*TSKFPKFWVHSAKRN 649
            ELP VD+FVTT D   +P + TVN++L++LA D PV + ACY+SDD  + +++ ++V  +KF + WV   +++
Sbjct:  174 ELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKH 246
The following BLAST results are available for this feature:
BLAST of EY665791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CSLF4_ORYSJ9.260e-1142.47Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665791 ID=EY665791; Name=EY665791; organism=Citrus sinensis; type=EST; length=873bp
TGCCGAAACCCAAAAATCCTTTTTACGAGTACTTGTTTTTCAAGCTCATG
GCCAATACACCCTTGTCATGTCTCCCTCTATACGAAAAAGTTTTTCATAA
AAACACATATCATAGGGCTTTAGATGTTATCATCTTGTTCCTTCTTCTAT
GTCTGCTCTTCTATCGGCTCTCAACGGTGAAGAATCATGGATTTGCTTGG
TTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTTTCATCTGGATTCTCAT
CGACAACTGCAAGTGGACTCCTTTGACCTACAAAACATATCCCCAACGTC
TCCAAGAAAGGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCAT
CATTTGCAATTGTCTTTGTCATTTTGCAAGTTACTACACACACACACACA
CGCACATGTGTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACAT
GTTTGTGACAACTGCTGATGCTGAACTCAAGCCGACAATCATCACTGTAA
ACACAGTGCTGGCTTTGTTGGCAATTGATAATCCAGTTCACAAGCTCGCT
TGCTATGTTTCTGATGATGCCTGCTCCCCTCTCAATTTCTAATCTCTTGT
TTAAACTTCTAAATTTCCTAAATTTTGGGTTCATTCTGCAAAAAGGAATA
AAGGAAAAATAAAAGCTCCCCTTTAAAAACTTCCAAAATATTGACCCGCC
GAATTCAAGTTCAGGGGAATCTCCTTGCAAATTGGGAAAAACTTTAAAAA
AAGATTTGAATAACTTTACCCAAAAACTTAAAAATGGCCCCCCAAAAAAT
TTTTCTTTTATTTTTCTTAAAGGGAGAAAATGGGGGTTTTTCTCCCAATA
AAAAACCCACTGAAACTCCCCCC
back to top