EL492573

Overview
NameEL492573
Unique NameEL492573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3 
Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EL492573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LUPAL1.220e-3089.47Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS1.220e-3089.47Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU1.220e-3089.47Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN1.220e-3089.47Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN1.220e-3089.47Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA1.220e-3089.47Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA1.220e-3089.47Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA1.220e-3089.47Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA1.220e-3089.47Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF1.220e-3089.47Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC3560 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3560, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492573 ID=EL492573; Name=EL492573; organism=Citrus sinensis; type=EST; length=437bp
GCAGCGCCTGATCTTTGCTGGGTAAGCAGCTGGAGGATGGAAGGACGCTT
GCGGATTACAACATTACAGAAGGAGTCGACTCTTCATCTGGTGTTGCGCT
CTGAGTGGGCGGTATGCANATTTTCGTCAAGACTCTTACTGGGAAAACAA
TTACCCTGGAGGTGGAGAGTTCTGATACCATTGACANTGTCAAGGCTAAN
ATTCAGGATAANGAANGGATTCCACCTGATCANCANAGGCTCATCTTTGC
TGGGAAGCAGCTTGAGGATGGCCGTAATTTAGCTGATTATAACATTCAAA
AGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGTCAATTCTGA
GCTATTTTGAGTTCTGTCTGTGTTTGTCTGCTCACAGCAAGATTTTAGTA
TTTGCTTATTGTTATAACGGTCGTTCTCTTACTCAGG
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