EY665782

Overview
NameEY665782
Unique NameEY665782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.450e-91
Identity = 158/185 (85.41%), Postives = 171/185 (92.43%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA STMALSSS F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGE
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGE 185

HSP 2 Score: 30.4166 bits (67), Expect = 1.450e-91
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  189 PLYPGGSFDPLGLAEDP 205
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 2.467e-91
Identity = 158/185 (85.41%), Postives = 172/185 (92.97%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA +TMA+SSS F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGE
Sbjct:    1 MAAATMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGE 184

HSP 2 Score: 31.9574 bits (71), Expect = 2.467e-91
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL DDP
Sbjct:  188 PLYPGGSFDPLGLADDP 204
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.199e-91
Identity = 160/182 (87.91%), Postives = 167/182 (91.76%), Query Frame = 3 
Query:   99 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            A S+MALSS S  GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGE
Sbjct:    3 AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGE 181

HSP 2 Score: 33.113 bits (74), Expect = 4.199e-91
Identity = 17/29 (58.62%), Postives = 17/29 (58.62%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKEL 735
            PI P G FDPLGL DDP        VKEL
Sbjct:  185 PIYPGGSFDPLGLADDPEA-FAELKVKEL 212
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 7.146e-91
Identity = 156/184 (84.78%), Postives = 169/184 (91.85%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG 638
            MA +TMALSSS F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLG
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLG 184

HSP 2 Score: 30.4166 bits (67), Expect = 7.146e-91
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  189 PLYPGGSFDPLGLAEDP 205
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 1.586e-90
Identity = 156/185 (84.32%), Postives = 169/185 (91.35%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA +TMALSSS F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGE
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGE 185

HSP 2 Score: 30.4166 bits (67), Expect = 1.586e-90
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  189 PLYPGGSFDPLGLAEDP 205
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.700e-90
Identity = 156/185 (84.32%), Postives = 170/185 (91.89%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA +TMALSSS F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGE
Sbjct:    1 MAAATMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGE 184

HSP 2 Score: 31.9574 bits (71), Expect = 2.700e-90
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL DDP
Sbjct:  188 PLYPGGSFDPLGLADDP 204
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 2.701e-90
Identity = 150/172 (87.21%), Postives = 160/172 (93.02%), Query Frame = 3 
Query:  126 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            +  G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:    2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 173

HSP 2 Score: 33.113 bits (74), Expect = 2.701e-90
Identity = 17/29 (58.62%), Postives = 17/29 (58.62%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKEL 735
            PI P G FDPLGL DDP        VKEL
Sbjct:  177 PIYPGGSFDPLGLADDPEA-FAELKVKEL 204
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 1.736e-89
Identity = 158/186 (84.95%), Postives = 167/186 (89.78%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA+STMALSS+ F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 183

HSP 2 Score: 33.8834 bits (76), Expect = 1.736e-89
Identity = 17/31 (54.84%), Postives = 18/31 (58.06%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKELNK 741
            P+ P G FDPLGL DDP        VKEL K
Sbjct:  187 PLYPGGSFDPLGLADDPEA-FGELKVKELKK 216
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 8.552e-89
Identity = 157/186 (84.41%), Postives = 167/186 (89.78%), Query Frame = 3 
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA+STMALSS+ F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGE
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGE 183

HSP 2 Score: 33.4982 bits (75), Expect = 8.552e-89
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKEL 735
            P+ P G FDPLGL DDP     +  VKEL
Sbjct:  187 PLYPGGTFDPLGLADDPEA-FADVKVKEL 214
[Close]
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.455e-88
Identity = 156/183 (85.25%), Postives = 165/183 (90.16%), Query Frame = 3 
Query:   96 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA STMALSS +  GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE
Sbjct:    1 MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGE 182

HSP 2 Score: 30.4166 bits (67), Expect = 1.455e-88
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  186 PLYPGGSFDPLGLAEDP 202
The following BLAST results are available for this feature:
BLAST of EY665782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB23_NICPL1.450e-9185.41Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB24_PETSP2.467e-9185.41Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOYBN4.199e-9187.91Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_PETSP7.146e-9184.78Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_PETSP1.586e-9084.32Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP2.700e-9084.32Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_CUCSA2.701e-9087.21Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE1.736e-8984.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE8.552e-8984.41Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_APIGR1.455e-8885.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665782 ID=EY665782; Name=EY665782; organism=Citrus sinensis; type=EST; length=858bp
AGAATCCGGGGAACCGCGGTCACGGTCGGGATTCCCGGGTCGACCACGCG
TCCGCTCGAACACTAGAGCTCACCCTTTACTCTGATCATTGTAAAATGGC
AACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACC
TTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGT
AAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGA
CAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGA
CTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCT
GACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAG
ATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCC
GCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAG
ATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCA
CGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAG
CCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGGGCTGACC
CATTGTACCCAGTGGCATCTTTGATCCATTGGGTTTGGGTGATGACCCCC
GAACGCTTTTGCCGAACCCAACGGTTAAGGAACTCAACAAGGAAAGGCGG
CCCAAGCCCCCCCCGTTAGGCCTTCTTCGTACCAGGGCCCATTTCGACCG
GAAGGGGGAACTACCATGAAAATTAGAAACAAAACTGCTGGATAGATACT
GGAACATA
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