EY665782

Overview
NameEY665782
Unique NameEY665782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 6.589e-83
Identity = 151/185 (81.62%), Postives = 160/185 (86.49%), Query Frame = 3
Query:   96 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA +TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGE
Sbjct:    1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGE 179          

HSP 2 Score: 31.9574 bits (71), Expect = 6.589e-83
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL DDP
Sbjct:  183 PLYPGGSFDPLGLADDP 199          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 8.590e-83
Identity = 145/179 (81.01%), Postives = 155/179 (86.59%), Query Frame = 3
Query:  135 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGE
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGE 192          

HSP 2 Score: 31.187 bits (69), Expect = 8.590e-83
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            PI P G FDPLGL +DP
Sbjct:  196 PIYPGGSFDPLGLAEDP 212          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 8.595e-83
Identity = 153/183 (83.61%), Postives = 159/183 (86.89%), Query Frame = 3
Query:   96 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGE
Sbjct:    1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGE 174          

HSP 2 Score: 34.6538 bits (78), Expect = 8.595e-83
Identity = 18/29 (62.07%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKEL 735
            PI P G FDPLGL DDP   L    VKEL
Sbjct:  178 PIYPGGSFDPLGLADDPEA-LAELKVKEL 205          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.243e-82
Identity = 147/192 (76.56%), Postives = 162/192 (84.38%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGE
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGE 196          

HSP 2 Score: 32.3426 bits (72), Expect = 3.243e-82
Identity = 13/17 (76.47%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            PI P G FDPLGL DDP
Sbjct:  200 PIYPGGNFDPLGLADDP 216          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.243e-82
Identity = 147/192 (76.56%), Postives = 162/192 (84.38%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGE
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGE 196          

HSP 2 Score: 32.3426 bits (72), Expect = 3.243e-82
Identity = 13/17 (76.47%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            PI P G FDPLGL DDP
Sbjct:  200 PIYPGGNFDPLGLADDP 216          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.122e-79
Identity = 143/190 (75.26%), Postives = 157/190 (82.63%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MATS +   S+F G+        NEL        GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+ GGPLGEGL
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGL 185          

HSP 2 Score: 33.113 bits (74), Expect = 1.122e-79
Identity = 13/17 (76.47%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            PI P G FDPLGL DDP
Sbjct:  187 PIYPGGAFDPLGLADDP 203          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.489e-79
Identity = 143/187 (76.47%), Postives = 156/187 (83.42%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MATST AL+S+F G+ +      NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGE
Sbjct:    1 MATSTAALTSTFSGQQLKPV---NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGE 183          

HSP 2 Score: 33.113 bits (74), Expect = 2.489e-79
Identity = 17/29 (58.62%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKEL 735
            PI P G FDPLGL DDP        VKEL
Sbjct:  187 PIYPGGSFDPLGLADDPEA-FAELKVKEL 214          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 7.716e-79
Identity = 148/189 (78.31%), Postives = 161/189 (85.19%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGEGL
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGL 184          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.868e-78
Identity = 138/188 (73.40%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA +T   S++  G++  L    NELS         R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGE
Sbjct:    1 MAAATAMHSTALAGQS--LVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGE 186          

HSP 2 Score: 33.8834 bits (76), Expect = 7.868e-78
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDPRT 705
            PI P G FDPLGL DDP T
Sbjct:  190 PIYPGGSFDPLGLADDPDT 208          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.026e-77
Identity = 140/189 (74.07%), Postives = 154/189 (81.48%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MAT++   SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGEGL
Sbjct:    1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGL 186          

HSP 2 Score: 33.113 bits (74), Expect = 1.026e-77
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P++P G FDPLGL DDP
Sbjct:  188 PLLPGGAFDPLGLADDP 204          
The following BLAST results are available for this feature:
BLAST of EY665782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB22_ORYSJ6.589e-8381.62Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY8.590e-8381.01Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_SOYBN8.595e-8383.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY3.243e-8276.56Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY3.243e-8276.56Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_GOSHI1.122e-7975.26Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU2.489e-7976.47Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_SILPR7.716e-7978.31Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_PHYPA7.868e-7873.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.026e-7774.07Chlorophyll a-b binding protein type I, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665782 ID=EY665782; Name=EY665782; organism=Citrus sinensis; type=EST; length=858bp
AGAATCCGGGGAACCGCGGTCACGGTCGGGATTCCCGGGTCGACCACGCG
TCCGCTCGAACACTAGAGCTCACCCTTTACTCTGATCATTGTAAAATGGC
AACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACC
TTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGT
AAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGA
CAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGA
CTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCT
GACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAG
ATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCC
GCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAG
ATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCA
CGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAG
CCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGGGCTGACC
CATTGTACCCAGTGGCATCTTTGATCCATTGGGTTTGGGTGATGACCCCC
GAACGCTTTTGCCGAACCCAACGGTTAAGGAACTCAACAAGGAAAGGCGG
CCCAAGCCCCCCCCGTTAGGCCTTCTTCGTACCAGGGCCCATTTCGACCG
GAAGGGGGAACTACCATGAAAATTAGAAACAAAACTGCTGGATAGATACT
GGAACATA
back to top