EY665782

Overview
NameEY665782
Unique NameEY665782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 5.053e-77
Identity = 139/185 (75.14%), Postives = 152/185 (82.16%), Query Frame = 3
Query:   96 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGE
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGE 182          

HSP 2 Score: 30.4166 bits (67), Expect = 5.053e-77
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+   G FDPLGLGDDP
Sbjct:  186 PLYLGGSFDPLGLGDDP 202          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.910e-76
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 3
Query:  204 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGE
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGE 146          

HSP 2 Score: 27.335 bits (59), Expect = 1.910e-76
Identity = 14/29 (48.28%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDPRTLLPNPTVKEL 735
            P+ P G FDPLGL + P        VKEL
Sbjct:  150 PLYPGGSFDPLGLAEVPEA-FAELKVKEL 177          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.963e-75
Identity = 140/189 (74.07%), Postives = 157/189 (83.07%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGEGL
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGL 183          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.963e-75
Identity = 140/189 (74.07%), Postives = 157/189 (83.07%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGEGL
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGL 183          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.506e-74
Identity = 141/190 (74.21%), Postives = 156/190 (82.11%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MAT  +   S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGEGL
Sbjct:    1 MATCAIQ-QSAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGL 185          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.045e-74
Identity = 128/155 (82.58%), Postives = 140/155 (90.32%), Query Frame = 3
Query:  183 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGEGL
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGL 184          

HSP 2 Score: 32.3426 bits (72), Expect = 5.045e-74
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL DDP
Sbjct:  186 PLYPGGAFDPLGLADDP 202          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.722e-74
Identity = 139/190 (73.16%), Postives = 155/190 (81.58%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MATS +   S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGEGL
Sbjct:    1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGL 185          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.580e-74
Identity = 139/190 (73.16%), Postives = 151/190 (79.47%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MATS +   S+F GK       GNE      N G  R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGEGL
Sbjct:    1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGL 185          

HSP 2 Score: 32.3426 bits (72), Expect = 6.580e-74
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL DDP
Sbjct:  187 PLYPGGAFDPLGLADDP 203          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.263e-73
Identity = 139/190 (73.16%), Postives = 153/190 (80.53%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            MATS +   S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGEGL
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGL 185          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.404e-72
Identity = 128/156 (82.05%), Postives = 140/156 (89.74%), Query Frame = 3
Query:  180 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEGL 647
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGEGL
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGL 157          
The following BLAST results are available for this feature:
BLAST of EY665782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB48_MAIZE5.053e-7775.14Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_PEA1.910e-7690.41Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_ORYSJ3.963e-7574.07Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.963e-7574.07Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.506e-7474.21Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI5.045e-7482.58Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_TOBAC5.722e-7473.16Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB215_PEA6.580e-7473.16Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP8.263e-7373.16Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC2.404e-7282.05Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665782 ID=EY665782; Name=EY665782; organism=Citrus sinensis; type=EST; length=858bp
AGAATCCGGGGAACCGCGGTCACGGTCGGGATTCCCGGGTCGACCACGCG
TCCGCTCGAACACTAGAGCTCACCCTTTACTCTGATCATTGTAAAATGGC
AACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACC
TTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGT
AAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGA
CAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGA
CTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCT
GACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAG
ATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCC
GCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAG
ATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCA
CGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAG
CCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGGGCTGACC
CATTGTACCCAGTGGCATCTTTGATCCATTGGGTTTGGGTGATGACCCCC
GAACGCTTTTGCCGAACCCAACGGTTAAGGAACTCAACAAGGAAAGGCGG
CCCAAGCCCCCCCCGTTAGGCCTTCTTCGTACCAGGGCCCATTTCGACCG
GAAGGGGGAACTACCATGAAAATTAGAAACAAAACTGCTGGATAGATACT
GGAACATA
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